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Sequence, Chains, Asymmetric and Biological Units

Title A MODEL FOR THE COMPLEX BETWEEN THE HYPOXIA-INDUCIBLE FACTOR-1 (HIF-1) AND ITS CONSENSUS DNA SEQUENCE
Keywords TRANSCRIPTION FACTOR, BASIC HELIX LOOP HELIX, COMPLEX (TRANSCRIPTION FACTOR/DNA)
Experiment theoretical model
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1D7G     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR  C 59 987 0
2  Protein   HYPOXIA-INDUCIBLE FACTOR 1 ALPHA  D 59 1011 0
3  DNA    A 14 439 0
4  DNA    B 14 445 0
total       146 2882 0

Proteins
Unit 1 GLU1 ARG2 LEU3 ALA4 ARG5 GLU6 ASN7 HIS8 SER9 GLU10 ILE11 GLU12 ARG13 ARG14 ARG15 ARG16 ASN17 LYS18 MET19 THR20 ALA21 TYR22 ILE23 THR24 GLU25 LEU26 SER27 ASP28 MET29 VAL30 PRO31 THR32 CYS33 SER34 ALA35 LEU36 ALA37 ARG38 LYS39 PRO40 ASP41 LYS42 LEU43 THR44 ILE45 LEU46 ARG47 MET48 ALA49 VAL50 SER51 HIS52 MET53 LYS54 SER55 LEU56 ARG57 GLY58 THR59
Unit 2 SER1 GLU2 ARG3 ARG4 LYS5 GLU6 LYS7 SER8 ARG9 ASP10 ALA11 ALA12 ARG13 SER14 ARG15 ARG16 SER17 LYS18 GLU19 SER20 GLU21 VAL22 PHE23 TYR24 GLU25 LEU26 ALA27 HIS28 GLN29 LEU30 PRO31 LEU32 PRO33 HIS34 ASN35 VAL36 SER37 SER38 HIS39 LEU40 ASP41 LYS42 ALA43 SER44 VAL45 MET46 ARG47 LEU48 THR49 ILE50 SER51 TYR52 LEU53 ARG54 VAL55 ARG56 LYS57 LEU58 LEU59

Nucleic acids
Unit 3 G5 C6 C7 C8 T9 A10 C11 G12 T13 G14 C15 T16 G17 C18
Unit 4 G5 C6 A7 G8 C9 A10 C11 G12 T13 A14 G15 G16 G17 C18

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany