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Sequence, Chains, Asymmetric and Biological Units

Title THE 2.1 ANGSTROM STRUCTURE OF A CYSTEINE PROTEASE WITH PROLI SPECIFICITY FROM GINGER RHIZOME, ZINGIBER OFFICINALE
Keywords CYSTEINE PROTEASE, GLYCOPROTEIN, PROLINE SPECIFICITY, CARBOH PAPAIN FAMILY, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1CQD     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROTEIN (PROTEASE II)  A 216 1646 0
2  Protein   PROTEIN (PROTEASE II)  B 216 1646 0
3  Protein   PROTEIN (PROTEASE II)  C 216 1646 0
4  Protein   PROTEIN (PROTEASE II)  D 216 1646 0
5  Ligand    E 3 0 38
6  Ligand    F 2 0 28
7  Ligand    G 3 0 38
8  Ligand    H 3 0 38
9  Ligand    I 3 0 38
10  Ligand   PROTEIN (PROTEASE II)  A 1 0 5
11  Ligand   PROTEIN (PROTEASE II)  B 2 0 19
12  Ligand   PROTEIN (PROTEASE II)  C 1 0 5
13  Ligand   PROTEIN (PROTEASE II)  D 1 0 5
14 Water     373 0 373
total       1256 6584 587
Proteins
Unit 1 LEU3 PRO4 ASP5 SER6 ILE7 ASP8 TRP9 ARG10 GLU11 ASN12 GLY13 ALA14 VAL15 VAL16 PRO17 VAL18 LYS19 ASN20 GLN21 GLY22 GLY23 CYS24 GLY25 SER26 CYS27 TRP28 ALA29 PHE30 SER31 THR32 VAL33 ALA34 ALA35 VAL36 GLU37 GLY38 ILE39 ASN40 GLN41 ILE42 VAL43 THR44 GLY45 ASP46 LEU47 ILE48 SER49 LEU50 SER51 GLU52 GLN53 GLN54 LEU55 VAL56 ASP57 CYS58 THR59 THR60 ALA61 ASN62 HIS63 GLY64 CYS65 ARG66 GLY67 GLY68 TRP69 MET70 ASN71 PRO72 ALA73 PHE74 GLN75 PHE76 ILE77 VAL78 ASN79 ASN80 GLY81 GLY82 ILE83 ASN84 SER85 GLU86 GLU87 THR88 TYR89 PRO90 TYR91 ARG92 GLY93 GLN94 ASP95 GLY96 ILE97 CYS98 ASN99 SER100 THR101 VAL102 ASN103 ALA104 PRO105 VAL106 VAL107 SER108 ILE109 ASP110 SER111 TYR112 GLU113 ASN114 VAL115 PRO116 SER117 HIS118 ASN119 GLU120 GLN121 SER122 LEU123 GLN124 LYS125 ALA126 VAL127 ALA128 ASN129 GLN130 PRO131 VAL132 SER133 VAL134 THR135 MET136 ASP137 ALA138 ALA139 GLY140 ARG141 ASP142 PHE143 GLN144 LEU145 TYR146 ARG147 SER148 GLY149 ILE150 PHE151 THR152 GLY153 SER154 CYS155 ASN156 ILE157 SER158 ALA159 ASN160 HIS161 ALA162 LEU163 THR164 VAL165 VAL166 GLY167 TYR168 GLY169 THR170 GLU171 ASN172 ASP173 LYS174 ASP175 PHE176 TRP177 ILE178 VAL179 LYS180 ASN181 SER182 TRP183 GLY184 LYS185 ASN186 TRP187 GLY188 GLU189 SER190 GLY191 TYR192 ILE193 ARG194 ALA195 GLU196 ARG197 ASN198 ILE199 GLU200 ASN201 PRO202 ASP203 GLY204 LYS205 CYS206 GLY207 ILE208 THR209 ARG210 PHE211 ALA212 SER213 TYR214 PRO215 VAL216 LYS217 LYS218
Unit 2 LEU3 PRO4 ASP5 SER6 ILE7 ASP8 TRP9 ARG10 GLU11 ASN12 GLY13 ALA14 VAL15 VAL16 PRO17 VAL18 LYS19 ASN20 GLN21 GLY22 GLY23 CYS24 GLY25 SER26 CYS27 TRP28 ALA29 PHE30 SER31 THR32 VAL33 ALA34 ALA35 VAL36 GLU37 GLY38 ILE39 ASN40 GLN41 ILE42 VAL43 THR44 GLY45 ASP46 LEU47 ILE48 SER49 LEU50 SER51 GLU52 GLN53 GLN54 LEU55 VAL56 ASP57 CYS58 THR59 THR60 ALA61 ASN62 HIS63 GLY64 CYS65 ARG66 GLY67 GLY68 TRP69 MET70 ASN71 PRO72 ALA73 PHE74 GLN75 PHE76 ILE77 VAL78 ASN79 ASN80 GLY81 GLY82 ILE83 ASN84 SER85 GLU86 GLU87 THR88 TYR89 PRO90 TYR91 ARG92 GLY93 GLN94 ASP95 GLY96 ILE97 CYS98 ASN99 SER100 THR101 VAL102 ASN103 ALA104 PRO105 VAL106 VAL107 SER108 ILE109 ASP110 SER111 TYR112 GLU113 ASN114 VAL115 PRO116 SER117 HIS118 ASN119 GLU120 GLN121 SER122 LEU123 GLN124 LYS125 ALA126 VAL127 ALA128 ASN129 GLN130 PRO131 VAL132 SER133 VAL134 THR135 MET136 ASP137 ALA138 ALA139 GLY140 ARG141 ASP142 PHE143 GLN144 LEU145 TYR146 ARG147 SER148 GLY149 ILE150 PHE151 THR152 GLY153 SER154 CYS155 ASN156 ILE157 SER158 ALA159 ASN160 HIS161 ALA162 LEU163 THR164 VAL165 VAL166 GLY167 TYR168 GLY169 THR170 GLU171 ASN172 ASP173 LYS174 ASP175 PHE176 TRP177 ILE178 VAL179 LYS180 ASN181 SER182 TRP183 GLY184 LYS185 ASN186 TRP187 GLY188 GLU189 SER190 GLY191 TYR192 ILE193 ARG194 ALA195 GLU196 ARG197 ASN198 ILE199 GLU200 ASN201 PRO202 ASP203 GLY204 LYS205 CYS206 GLY207 ILE208 THR209 ARG210 PHE211 ALA212 SER213 TYR214 PRO215 VAL216 LYS217 LYS218
Unit 3 LEU3 PRO4 ASP5 SER6 ILE7 ASP8 TRP9 ARG10 GLU11 ASN12 GLY13 ALA14 VAL15 VAL16 PRO17 VAL18 LYS19 ASN20 GLN21 GLY22 GLY23 CYS24 GLY25 SER26 CYS27 TRP28 ALA29 PHE30 SER31 THR32 VAL33 ALA34 ALA35 VAL36 GLU37 GLY38 ILE39 ASN40 GLN41 ILE42 VAL43 THR44 GLY45 ASP46 LEU47 ILE48 SER49 LEU50 SER51 GLU52 GLN53 GLN54 LEU55 VAL56 ASP57 CYS58 THR59 THR60 ALA61 ASN62 HIS63 GLY64 CYS65 ARG66 GLY67 GLY68 TRP69 MET70 ASN71 PRO72 ALA73 PHE74 GLN75 PHE76 ILE77 VAL78 ASN79 ASN80 GLY81 GLY82 ILE83 ASN84 SER85 GLU86 GLU87 THR88 TYR89 PRO90 TYR91 ARG92 GLY93 GLN94 ASP95 GLY96 ILE97 CYS98 ASN99 SER100 THR101 VAL102 ASN103 ALA104 PRO105 VAL106 VAL107 SER108 ILE109 ASP110 SER111 TYR112 GLU113 ASN114 VAL115 PRO116 SER117 HIS118 ASN119 GLU120 GLN121 SER122 LEU123 GLN124 LYS125 ALA126 VAL127 ALA128 ASN129 GLN130 PRO131 VAL132 SER133 VAL134 THR135 MET136 ASP137 ALA138 ALA139 GLY140 ARG141 ASP142 PHE143 GLN144 LEU145 TYR146 ARG147 SER148 GLY149 ILE150 PHE151 THR152 GLY153 SER154 CYS155 ASN156 ILE157 SER158 ALA159 ASN160 HIS161 ALA162 LEU163 THR164 VAL165 VAL166 GLY167 TYR168 GLY169 THR170 GLU171 ASN172 ASP173 LYS174 ASP175 PHE176 TRP177 ILE178 VAL179 LYS180 ASN181 SER182 TRP183 GLY184 LYS185 ASN186 TRP187 GLY188 GLU189 SER190 GLY191 TYR192 ILE193 ARG194 ALA195 GLU196 ARG197 ASN198 ILE199 GLU200 ASN201 PRO202 ASP203 GLY204 LYS205 CYS206 GLY207 ILE208 THR209 ARG210 PHE211 ALA212 SER213 TYR214 PRO215 VAL216 LYS217 LYS218
Unit 4 LEU3 PRO4 ASP5 SER6 ILE7 ASP8 TRP9 ARG10 GLU11 ASN12 GLY13 ALA14 VAL15 VAL16 PRO17 VAL18 LYS19 ASN20 GLN21 GLY22 GLY23 CYS24 GLY25 SER26 CYS27 TRP28 ALA29 PHE30 SER31 THR32 VAL33 ALA34 ALA35 VAL36 GLU37 GLY38 ILE39 ASN40 GLN41 ILE42 VAL43 THR44 GLY45 ASP46 LEU47 ILE48 SER49 LEU50 SER51 GLU52 GLN53 GLN54 LEU55 VAL56 ASP57 CYS58 THR59 THR60 ALA61 ASN62 HIS63 GLY64 CYS65 ARG66 GLY67 GLY68 TRP69 MET70 ASN71 PRO72 ALA73 PHE74 GLN75 PHE76 ILE77 VAL78 ASN79 ASN80 GLY81 GLY82 ILE83 ASN84 SER85 GLU86 GLU87 THR88 TYR89 PRO90 TYR91 ARG92 GLY93 GLN94 ASP95 GLY96 ILE97 CYS98 ASN99 SER100 THR101 VAL102 ASN103 ALA104 PRO105 VAL106 VAL107 SER108 ILE109 ASP110 SER111 TYR112 GLU113 ASN114 VAL115 PRO116 SER117 HIS118 ASN119 GLU120 GLN121 SER122 LEU123 GLN124 LYS125 ALA126 VAL127 ALA128 ASN129 GLN130 PRO131 VAL132 SER133 VAL134 THR135 MET136 ASP137 ALA138 ALA139 GLY140 ARG141 ASP142 PHE143 GLN144 LEU145 TYR146 ARG147 SER148 GLY149 ILE150 PHE151 THR152 GLY153 SER154 CYS155 ASN156 ILE157 SER158 ALA159 ASN160 HIS161 ALA162 LEU163 THR164 VAL165 VAL166 GLY167 TYR168 GLY169 THR170 GLU171 ASN172 ASP173 LYS174 ASP175 PHE176 TRP177 ILE178 VAL179 LYS180 ASN181 SER182 TRP183 GLY184 LYS185 ASN186 TRP187 GLY188 GLU189 SER190 GLY191 TYR192 ILE193 ARG194 ALA195 GLU196 ARG197 ASN198 ILE199 GLU200 ASN201 PRO202 ASP203 GLY204 LYS205 CYS206 GLY207 ILE208 THR209 ARG210 PHE211 ALA212 SER213 TYR214 PRO215 VAL216 LYS217 LYS218
Ligands
Unit 5 NAG1 FUL2 NAG3
Unit 6 NAG1 NAG2
Unit 7 NAG1 FUC2 NAG3
Unit 8 NAG1 FUC2 NAG3
Unit 9 NAG1 FUC2 NAG3
Unit 10 THJ800
Unit 11 THJ800 NAG900
Unit 12 THJ800
Unit 13 THJ800
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany