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Sequence, Chains, Asymmetric and Biological Units

Title THREE-DIMENSIONAL STRUCTURE OF D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM THE HYPERTHERMOPHILIC ARCHAEON METHANOTH FERVIDUS
Keywords OXYDOREDUCTASE, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1CF2     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    P 336 2612 0
2  Protein    R 336 2612 0
3  Protein    O 336 2612 0
4  Protein    Q 336 2612 0
5  Ligand    P 2 0 53
6  Ligand    R 2 0 53
7  Ligand    O 2 0 53
8  Ligand    Q 2 0 53
9 Water     960 0 960
total       2312 10448 1172
Proteins
Unit 1 MET1 LYS2 ALA3 VAL4 ALA5 ILE6 ASN7 GLY8 TYR9 GLY10 THR11 VAL12 GLY13 LYS14 ARG15 VAL16 ALA17 ASP18 ALA19 ILE20 ALA21 GLN22 GLN23 ASP24 ASP25 MET26 LYS27 VAL28 ILE29 GLY30 VAL31 SER32 LYS33 THR34 ARG35 PRO36 ASP37 PHE38 GLU39 ALA40 ARG41 MET42 ALA43 LEU44 LYS45 LYS46 GLY47 TYR48 ASP49 LEU50 TYR51 VAL52 ALA53 ILE54 PRO55 GLU56 ARG57 VAL58 LYS59 LEU60 PHE61 GLU62 LYS63 ALA64 GLY65 ILE66 GLU67 VAL68 ALA69 GLY70 THR71 VAL72 ASP73 ASP74 MET75 LEU76 ASP77 GLU78 ALA79 ASP80 ILE81 VAL82 ILE83 ASP84 CYS85 THR86 PRO87 GLU88 GLY89 ILE90 GLY91 ALA92 LYS93 ASN94 LEU95 LYS96 MET97 TYR98 LYS99 GLU100 LYS101 GLY102 ILE103 LYS104 ALA105 ILE106 PHE107 GLN108 GLY109 GLY110 GLU111 LYS112 HIS113 GLU114 ASP115 ILE116 GLY117 LEU118 SER119 PHE120 ASN121 SER122 LEU123 SER124 ASN125 TYR126 GLU127 GLU128 SER129 TYR130 GLY131 LYS132 ASP133 TYR134 THR135 ARG136 VAL137 VAL138 SER139 CYS140 ASN141 THR142 THR143 GLY144 LEU145 CYS146 ARG147 THR148 LEU149 LYS150 PRO151 LEU152 HIS153 ASP154 SER155 PHE156 GLY157 ILE158 LYS159 LYS160 VAL161 ARG162 ALA163 VAL164 ILE165 VAL166 ARG167 ARG168 GLY169 ALA170 ASP171 PRO172 ALA173 GLN174 VAL175 SER176 LYS177 GLY178 PRO179 ILE180 ASN181 ALA182 ILE183 ILE184 PRO185 ASN186 PRO187 PRO188 LYS189 LEU190 PRO191 SER192 HIS193 HIS194 GLY195 PRO196 ASP197 VAL198 LYS199 THR200 VAL201 LEU202 ASP203 ILE204 ASN205 ILE206 ASP207 THR208 MET209 ALA210 VAL211 ILE212 VAL213 PRO214 THR215 THR216 LEU217 MET218 HIS219 GLN220 HIS221 ASN222 VAL223 MET224 VAL225 GLU226 VAL227 GLU228 GLU229 THR230 PRO231 THR232 VAL233 ASP234 ASP235 ILE236 ILE237 ASP238 VAL239 PHE240 GLU241 ASP242 THR243 PRO244 ARG245 VAL246 ILE247 LEU248 ILE249 SER250 ALA251 GLU252 ASP253 GLY254 LEU255 THR256 SER257 THR258 ALA259 GLU260 ILE261 MET262 GLU263 TYR264 ALA265 LYS266 GLU267 LEU268 GLY269 ARG270 SER271 ARG272 ASN273 ASP274 LEU275 PHE276 GLU277 ILE278 PRO279 VAL280 TRP281 ARG282 GLU283 SER284 ILE285 THR286 VAL287 VAL288 ASP289 ASN290 GLU291 ILE292 TYR293 TYR294 MET295 GLN296 ALA297 VAL298 HIS299 GLN300 GLU301 SER302 ASP303 ILE304 VAL305 PRO306 GLU307 ASN308 VAL309 ASP310 ALA311 VAL312 ARG313 ALA314 ILE315 LEU316 GLU317 MET318 GLU319 GLU320 ASP321 LYS322 TYR323 LYS324 SER325 ILE326 ASN327 LYS328 THR329 ASN330 LYS331 ALA332 MET333 ASN334 ILE335 LEU336
Unit 2 MET1 LYS2 ALA3 VAL4 ALA5 ILE6 ASN7 GLY8 TYR9 GLY10 THR11 VAL12 GLY13 LYS14 ARG15 VAL16 ALA17 ASP18 ALA19 ILE20 ALA21 GLN22 GLN23 ASP24 ASP25 MET26 LYS27 VAL28 ILE29 GLY30 VAL31 SER32 LYS33 THR34 ARG35 PRO36 ASP37 PHE38 GLU39 ALA40 ARG41 MET42 ALA43 LEU44 LYS45 LYS46 GLY47 TYR48 ASP49 LEU50 TYR51 VAL52 ALA53 ILE54 PRO55 GLU56 ARG57 VAL58 LYS59 LEU60 PHE61 GLU62 LYS63 ALA64 GLY65 ILE66 GLU67 VAL68 ALA69 GLY70 THR71 VAL72 ASP73 ASP74 MET75 LEU76 ASP77 GLU78 ALA79 ASP80 ILE81 VAL82 ILE83 ASP84 CYS85 THR86 PRO87 GLU88 GLY89 ILE90 GLY91 ALA92 LYS93 ASN94 LEU95 LYS96 MET97 TYR98 LYS99 GLU100 LYS101 GLY102 ILE103 LYS104 ALA105 ILE106 PHE107 GLN108 GLY109 GLY110 GLU111 LYS112 HIS113 GLU114 ASP115 ILE116 GLY117 LEU118 SER119 PHE120 ASN121 SER122 LEU123 SER124 ASN125 TYR126 GLU127 GLU128 SER129 TYR130 GLY131 LYS132 ASP133 TYR134 THR135 ARG136 VAL137 VAL138 SER139 CYS140 ASN141 THR142 THR143 GLY144 LEU145 CYS146 ARG147 THR148 LEU149 LYS150 PRO151 LEU152 HIS153 ASP154 SER155 PHE156 GLY157 ILE158 LYS159 LYS160 VAL161 ARG162 ALA163 VAL164 ILE165 VAL166 ARG167 ARG168 GLY169 ALA170 ASP171 PRO172 ALA173 GLN174 VAL175 SER176 LYS177 GLY178 PRO179 ILE180 ASN181 ALA182 ILE183 ILE184 PRO185 ASN186 PRO187 PRO188 LYS189 LEU190 PRO191 SER192 HIS193 HIS194 GLY195 PRO196 ASP197 VAL198 LYS199 THR200 VAL201 LEU202 ASP203 ILE204 ASN205 ILE206 ASP207 THR208 MET209 ALA210 VAL211 ILE212 VAL213 PRO214 THR215 THR216 LEU217 MET218 HIS219 GLN220 HIS221 ASN222 VAL223 MET224 VAL225 GLU226 VAL227 GLU228 GLU229 THR230 PRO231 THR232 VAL233 ASP234 ASP235 ILE236 ILE237 ASP238 VAL239 PHE240 GLU241 ASP242 THR243 PRO244 ARG245 VAL246 ILE247 LEU248 ILE249 SER250 ALA251 GLU252 ASP253 GLY254 LEU255 THR256 SER257 THR258 ALA259 GLU260 ILE261 MET262 GLU263 TYR264 ALA265 LYS266 GLU267 LEU268 GLY269 ARG270 SER271 ARG272 ASN273 ASP274 LEU275 PHE276 GLU277 ILE278 PRO279 VAL280 TRP281 ARG282 GLU283 SER284 ILE285 THR286 VAL287 VAL288 ASP289 ASN290 GLU291 ILE292 TYR293 TYR294 MET295 GLN296 ALA297 VAL298 HIS299 GLN300 GLU301 SER302 ASP303 ILE304 VAL305 PRO306 GLU307 ASN308 VAL309 ASP310 ALA311 VAL312 ARG313 ALA314 ILE315 LEU316 GLU317 MET318 GLU319 GLU320 ASP321 LYS322 TYR323 LYS324 SER325 ILE326 ASN327 LYS328 THR329 ASN330 LYS331 ALA332 MET333 ASN334 ILE335 LEU336
Unit 3 MET1 LYS2 ALA3 VAL4 ALA5 ILE6 ASN7 GLY8 TYR9 GLY10 THR11 VAL12 GLY13 LYS14 ARG15 VAL16 ALA17 ASP18 ALA19 ILE20 ALA21 GLN22 GLN23 ASP24 ASP25 MET26 LYS27 VAL28 ILE29 GLY30 VAL31 SER32 LYS33 THR34 ARG35 PRO36 ASP37 PHE38 GLU39 ALA40 ARG41 MET42 ALA43 LEU44 LYS45 LYS46 GLY47 TYR48 ASP49 LEU50 TYR51 VAL52 ALA53 ILE54 PRO55 GLU56 ARG57 VAL58 LYS59 LEU60 PHE61 GLU62 LYS63 ALA64 GLY65 ILE66 GLU67 VAL68 ALA69 GLY70 THR71 VAL72 ASP73 ASP74 MET75 LEU76 ASP77 GLU78 ALA79 ASP80 ILE81 VAL82 ILE83 ASP84 CYS85 THR86 PRO87 GLU88 GLY89 ILE90 GLY91 ALA92 LYS93 ASN94 LEU95 LYS96 MET97 TYR98 LYS99 GLU100 LYS101 GLY102 ILE103 LYS104 ALA105 ILE106 PHE107 GLN108 GLY109 GLY110 GLU111 LYS112 HIS113 GLU114 ASP115 ILE116 GLY117 LEU118 SER119 PHE120 ASN121 SER122 LEU123 SER124 ASN125 TYR126 GLU127 GLU128 SER129 TYR130 GLY131 LYS132 ASP133 TYR134 THR135 ARG136 VAL137 VAL138 SER139 CYS140 ASN141 THR142 THR143 GLY144 LEU145 CYS146 ARG147 THR148 LEU149 LYS150 PRO151 LEU152 HIS153 ASP154 SER155 PHE156 GLY157 ILE158 LYS159 LYS160 VAL161 ARG162 ALA163 VAL164 ILE165 VAL166 ARG167 ARG168 GLY169 ALA170 ASP171 PRO172 ALA173 GLN174 VAL175 SER176 LYS177 GLY178 PRO179 ILE180 ASN181 ALA182 ILE183 ILE184 PRO185 ASN186 PRO187 PRO188 LYS189 LEU190 PRO191 SER192 HIS193 HIS194 GLY195 PRO196 ASP197 VAL198 LYS199 THR200 VAL201 LEU202 ASP203 ILE204 ASN205 ILE206 ASP207 THR208 MET209 ALA210 VAL211 ILE212 VAL213 PRO214 THR215 THR216 LEU217 MET218 HIS219 GLN220 HIS221 ASN222 VAL223 MET224 VAL225 GLU226 VAL227 GLU228 GLU229 THR230 PRO231 THR232 VAL233 ASP234 ASP235 ILE236 ILE237 ASP238 VAL239 PHE240 GLU241 ASP242 THR243 PRO244 ARG245 VAL246 ILE247 LEU248 ILE249 SER250 ALA251 GLU252 ASP253 GLY254 LEU255 THR256 SER257 THR258 ALA259 GLU260 ILE261 MET262 GLU263 TYR264 ALA265 LYS266 GLU267 LEU268 GLY269 ARG270 SER271 ARG272 ASN273 ASP274 LEU275 PHE276 GLU277 ILE278 PRO279 VAL280 TRP281 ARG282 GLU283 SER284 ILE285 THR286 VAL287 VAL288 ASP289 ASN290 GLU291 ILE292 TYR293 TYR294 MET295 GLN296 ALA297 VAL298 HIS299 GLN300 GLU301 SER302 ASP303 ILE304 VAL305 PRO306 GLU307 ASN308 VAL309 ASP310 ALA311 VAL312 ARG313 ALA314 ILE315 LEU316 GLU317 MET318 GLU319 GLU320 ASP321 LYS322 TYR323 LYS324 SER325 ILE326 ASN327 LYS328 THR329 ASN330 LYS331 ALA332 MET333 ASN334 ILE335 LEU336
Unit 4 MET1 LYS2 ALA3 VAL4 ALA5 ILE6 ASN7 GLY8 TYR9 GLY10 THR11 VAL12 GLY13 LYS14 ARG15 VAL16 ALA17 ASP18 ALA19 ILE20 ALA21 GLN22 GLN23 ASP24 ASP25 MET26 LYS27 VAL28 ILE29 GLY30 VAL31 SER32 LYS33 THR34 ARG35 PRO36 ASP37 PHE38 GLU39 ALA40 ARG41 MET42 ALA43 LEU44 LYS45 LYS46 GLY47 TYR48 ASP49 LEU50 TYR51 VAL52 ALA53 ILE54 PRO55 GLU56 ARG57 VAL58 LYS59 LEU60 PHE61 GLU62 LYS63 ALA64 GLY65 ILE66 GLU67 VAL68 ALA69 GLY70 THR71 VAL72 ASP73 ASP74 MET75 LEU76 ASP77 GLU78 ALA79 ASP80 ILE81 VAL82 ILE83 ASP84 CYS85 THR86 PRO87 GLU88 GLY89 ILE90 GLY91 ALA92 LYS93 ASN94 LEU95 LYS96 MET97 TYR98 LYS99 GLU100 LYS101 GLY102 ILE103 LYS104 ALA105 ILE106 PHE107 GLN108 GLY109 GLY110 GLU111 LYS112 HIS113 GLU114 ASP115 ILE116 GLY117 LEU118 SER119 PHE120 ASN121 SER122 LEU123 SER124 ASN125 TYR126 GLU127 GLU128 SER129 TYR130 GLY131 LYS132 ASP133 TYR134 THR135 ARG136 VAL137 VAL138 SER139 CYS140 ASN141 THR142 THR143 GLY144 LEU145 CYS146 ARG147 THR148 LEU149 LYS150 PRO151 LEU152 HIS153 ASP154 SER155 PHE156 GLY157 ILE158 LYS159 LYS160 VAL161 ARG162 ALA163 VAL164 ILE165 VAL166 ARG167 ARG168 GLY169 ALA170 ASP171 PRO172 ALA173 GLN174 VAL175 SER176 LYS177 GLY178 PRO179 ILE180 ASN181 ALA182 ILE183 ILE184 PRO185 ASN186 PRO187 PRO188 LYS189 LEU190 PRO191 SER192 HIS193 HIS194 GLY195 PRO196 ASP197 VAL198 LYS199 THR200 VAL201 LEU202 ASP203 ILE204 ASN205 ILE206 ASP207 THR208 MET209 ALA210 VAL211 ILE212 VAL213 PRO214 THR215 THR216 LEU217 MET218 HIS219 GLN220 HIS221 ASN222 VAL223 MET224 VAL225 GLU226 VAL227 GLU228 GLU229 THR230 PRO231 THR232 VAL233 ASP234 ASP235 ILE236 ILE237 ASP238 VAL239 PHE240 GLU241 ASP242 THR243 PRO244 ARG245 VAL246 ILE247 LEU248 ILE249 SER250 ALA251 GLU252 ASP253 GLY254 LEU255 THR256 SER257 THR258 ALA259 GLU260 ILE261 MET262 GLU263 TYR264 ALA265 LYS266 GLU267 LEU268 GLY269 ARG270 SER271 ARG272 ASN273 ASP274 LEU275 PHE276 GLU277 ILE278 PRO279 VAL280 TRP281 ARG282 GLU283 SER284 ILE285 THR286 VAL287 VAL288 ASP289 ASN290 GLU291 ILE292 TYR293 TYR294 MET295 GLN296 ALA297 VAL298 HIS299 GLN300 GLU301 SER302 ASP303 ILE304 VAL305 PRO306 GLU307 ASN308 VAL309 ASP310 ALA311 VAL312 ARG313 ALA314 ILE315 LEU316 GLU317 MET318 GLU319 GLU320 ASP321 LYS322 TYR323 LYS324 SER325 ILE326 ASN327 LYS328 THR329 ASN330 LYS331 ALA332 MET333 ASN334 ILE335 LEU336
Ligands
Unit 5 NAP340 SO41001
Unit 6 NAP340 SO41002
Unit 7 NAP340 SO41003
Unit 8 NAP340 SO41004
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany