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Sequence, Chains, Asymmetric and Biological Units

Title 5S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION
Keywords 5S RRNA, 23S RRNA, RIBOSOME, LARGE RIBOSOMAL SUBUNIT, PROTEIN BIOSYNTHESIS, RIBONUCLEIC ACID, EM-RECONSTRUCTION, ATOMIC STRUCTURE, 3D ARRANGEMENT, FITTING
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1C2X     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    C 120 2576 0
total       120 2576 0

Nucleic acids
Unit 1 U1 G2 C3 C4 U5 G6 G7 C8 G9 G10 C11 C12 G13 U14 A15 G16 C17 G18 C19 G20 G21 U22 G23 G24 U25 C26 C27 C28 A29 C30 C31 U32 G33 A34 C35 C36 C37 C38 A39 U40 G41 C42 C43 G44 A45 A46 C47 U48 C49 A50 G51 A52 A53 G54 U55 G56 A57 A58 A59 C60 G61 C62 C63 G64 U65 A66 G67 C68 G69 C70 C71 G72 A73 U74 G75 G76 U77 A78 G79 U80 G81 U82 G83 G84 G85 G86 U87 C88 U89 C90 C91 C92 C93 A94 U95 G96 C97 G98 A99 G100 A101 G102 U103 A104 G105 G106 G107 A108 A109 C110 U111 G112 C113 C114 A115 G116 G117 C118 A119 U120

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany