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Sequence, Chains, Asymmetric and Biological Units

Title COMPLEX OF A DROMEDARY SINGLE-DOMAIN VHH ANTIBODY FRAGMENT WITH RNASE A
Keywords IMMUNOGLUBULIN, ANTIBODY COMPLEX, RIBONUCLEASE, HYDROLASE/IMMUNE SYSTEM COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1BZQ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROTEIN (RNASE A)  A 124 951 0
2  Protein   PROTEIN (RNASE A)  B 124 951 0
3  Protein   PROTEIN (RNASE A)  C 124 951 0
4  Protein   PROTEIN (RNASE A)  D 124 951 0
5  Protein   PROTEIN (ANTIBODY CAB-RN05)  K 124 935 0
6  Protein   PROTEIN (ANTIBODY CAB-RN05)  L 124 935 0
7  Protein   PROTEIN (ANTIBODY CAB-RN05)  M 124 935 0
8  Protein   PROTEIN (ANTIBODY CAB-RN05)  N 124 935 0
9  Ligand   PROTEIN (RNASE A)  A 1 0 5
10  Ligand   PROTEIN (RNASE A)  B 1 0 5
11  Ligand   PROTEIN (RNASE A)  C 1 0 5
12  Ligand   PROTEIN (RNASE A)  D 1 0 5
total       996 7544 20

Proteins
Unit 1 LYS1 GLU2 THR3 ALA4 ALA5 ALA6 LYS7 PHE8 GLU9 ARG10 GLN11 HIS12 MET13 ASP14 SER15 SER16 THR17 SER18 ALA19 ALA20 SER21 SER22 SER23 ASN24 TYR25 CYS26 ASN27 GLN28 MET29 MET30 LYS31 SER32 ARG33 ASN34 LEU35 THR36 LYS37 ASP38 ARG39 CYS40 LYS41 PRO42 VAL43 ASN44 THR45 PHE46 VAL47 HIS48 GLU49 SER50 LEU51 ALA52 ASP53 VAL54 GLN55 ALA56 VAL57 CYS58 SER59 GLN60 LYS61 ASN62 VAL63 ALA64 CYS65 LYS66 ASN67 GLY68 GLN69 THR70 ASN71 CYS72 TYR73 GLN74 SER75 TYR76 SER77 THR78 MET79 SER80 ILE81 THR82 ASP83 CYS84 ARG85 GLU86 THR87 GLY88 SER89 SER90 LYS91 TYR92 PRO93 ASN94 CYS95 ALA96 TYR97 LYS98 THR99 THR100 GLN101 ALA102 ASN103 LYS104 HIS105 ILE106 ILE107 VAL108 ALA109 CYS110 GLU111 GLY112 ASN113 PRO114 TYR115 VAL116 PRO117 VAL118 HIS119 PHE120 ASP121 ALA122 SER123 VAL124
Unit 2 LYS201 GLU202 THR203 ALA204 ALA205 ALA206 LYS207 PHE208 GLU209 ARG210 GLN211 HIS212 MET213 ASP214 SER215 SER216 THR217 SER218 ALA219 ALA220 SER221 SER222 SER223 ASN224 TYR225 CYS226 ASN227 GLN228 MET229 MET230 LYS231 SER232 ARG233 ASN234 LEU235 THR236 LYS237 ASP238 ARG239 CYS240 LYS241 PRO242 VAL243 ASN244 THR245 PHE246 VAL247 HIS248 GLU249 SER250 LEU251 ALA252 ASP253 VAL254 GLN255 ALA256 VAL257 CYS258 SER259 GLN260 LYS261 ASN262 VAL263 ALA264 CYS265 LYS266 ASN267 GLY268 GLN269 THR270 ASN271 CYS272 TYR273 GLN274 SER275 TYR276 SER277 THR278 MET279 SER280 ILE281 THR282 ASP283 CYS284 ARG285 GLU286 THR287 GLY288 SER289 SER290 LYS291 TYR292 PRO293 ASN294 CYS295 ALA296 TYR297 LYS298 THR299 THR300 GLN301 ALA302 ASN303 LYS304 HIS305 ILE306 ILE307 VAL308 ALA309 CYS310 GLU311 GLY312 ASN313 PRO314 TYR315 VAL316 PRO317 VAL318 HIS319 PHE320 ASP321 ALA322 SER323 VAL324
Unit 3 LYS401 GLU402 THR403 ALA404 ALA405 ALA406 LYS407 PHE408 GLU409 ARG410 GLN411 HIS412 MET413 ASP414 SER415 SER416 THR417 SER418 ALA419 ALA420 SER421 SER422 SER423 ASN424 TYR425 CYS426 ASN427 GLN428 MET429 MET430 LYS431 SER432 ARG433 ASN434 LEU435 THR436 LYS437 ASP438 ARG439 CYS440 LYS441 PRO442 VAL443 ASN444 THR445 PHE446 VAL447 HIS448 GLU449 SER450 LEU451 ALA452 ASP453 VAL454 GLN455 ALA456 VAL457 CYS458 SER459 GLN460 LYS461 ASN462 VAL463 ALA464 CYS465 LYS466 ASN467 GLY468 GLN469 THR470 ASN471 CYS472 TYR473 GLN474 SER475 TYR476 SER477 THR478 MET479 SER480 ILE481 THR482 ASP483 CYS484 ARG485 GLU486 THR487 GLY488 SER489 SER490 LYS491 TYR492 PRO493 ASN494 CYS495 ALA496 TYR497 LYS498 THR499 THR500 GLN501 ALA502 ASN503 LYS504 HIS505 ILE506 ILE507 VAL508 ALA509 CYS510 GLU511 GLY512 ASN513 PRO514 TYR515 VAL516 PRO517 VAL518 HIS519 PHE520 ASP521 ALA522 SER523 VAL524
Unit 4 LYS601 GLU602 THR603 ALA604 ALA605 ALA606 LYS607 PHE608 GLU609 ARG610 GLN611 HIS612 MET613 ASP614 SER615 SER616 THR617 SER618 ALA619 ALA620 SER621 SER622 SER623 ASN624 TYR625 CYS626 ASN627 GLN628 MET629 MET630 LYS631 SER632 ARG633 ASN634 LEU635 THR636 LYS637 ASP638 ARG639 CYS640 LYS641 PRO642 VAL643 ASN644 THR645 PHE646 VAL647 HIS648 GLU649 SER650 LEU651 ALA652 ASP653 VAL654 GLN655 ALA656 VAL657 CYS658 SER659 GLN660 LYS661 ASN662 VAL663 ALA664 CYS665 LYS666 ASN667 GLY668 GLN669 THR670 ASN671 CYS672 TYR673 GLN674 SER675 TYR676 SER677 THR678 MET679 SER680 ILE681 THR682 ASP683 CYS684 ARG685 GLU686 THR687 GLY688 SER689 SER690 LYS691 TYR692 PRO693 ASN694 CYS695 ALA696 TYR697 LYS698 THR699 THR700 GLN701 ALA702 ASN703 LYS704 HIS705 ILE706 ILE707 VAL708 ALA709 CYS710 GLU711 GLY712 ASN713 PRO714 TYR715 VAL716 PRO717 VAL718 HIS719 PHE720 ASP721 ALA722 SER723 VAL724
Unit 5 GLN801 VAL802 GLN803 LEU804 VAL805 GLU806 SER807 GLY808 GLY809 GLY810 LEU811 VAL812 GLN813 ALA814 GLY815 GLY816 SER817 LEU818 ARG819 LEU820 SER821 CYS822 ALA823 ALA824 SER825 GLY826 TYR827 ALA828 TYR829 THR830 TYR831 ILE832 TYR833 MET834 GLY835 TRP836 PHE837 ARG838 GLN839 ALA840 PRO841 GLY842 LYS843 GLU844 ARG845 GLU846 GLY847 VAL848 ALA849 ALA850 MET851 ASP852 SER853 GLY854 GLY855 GLY856 GLY857 THR858 LEU859 TYR860 ALA861 ASP862 SER863 VAL864 LYS865 GLY866 ARG867 PHE868 THR869 ILE870 SER871 ARG872 ASP873 LYS874 GLY875 LYS876 ASN877 THR878 VAL879 TYR880 LEU881 GLN882 MET883 ASP884 SER885 LEU886 LYS887 PRO888 GLU889 ASP890 THR891 ALA892 THR893 TYR894 TYR895 CYS896 ALA897 ALA898 GLY899 GLY900 TYR901 GLU902 LEU903 ARG904 ASP905 ARG906 THR907 TYR908 GLY909 GLN910 TRP911 GLY912 GLN913 GLY914 THR915 GLN916 VAL917 THR918 VAL919 SER920 SER921 ARG922 GLY923 ARG924
Unit 6 GLN1001 VAL1002 GLN1003 LEU1004 VAL1005 GLU1006 SER1007 GLY1008 GLY1009 GLY1010 LEU1011 VAL1012 GLN1013 ALA1014 GLY1015 GLY1016 SER1017 LEU1018 ARG1019 LEU1020 SER1021 CYS1022 ALA1023 ALA1024 SER1025 GLY1026 TYR1027 ALA1028 TYR1029 THR1030 TYR1031 ILE1032 TYR1033 MET1034 GLY1035 TRP1036 PHE1037 ARG1038 GLN1039 ALA1040 PRO1041 GLY1042 LYS1043 GLU1044 ARG1045 GLU1046 GLY1047 VAL1048 ALA1049 ALA1050 MET1051 ASP1052 SER1053 GLY1054 GLY1055 GLY1056 GLY1057 THR1058 LEU1059 TYR1060 ALA1061 ASP1062 SER1063 VAL1064 LYS1065 GLY1066 ARG1067 PHE1068 THR1069 ILE1070 SER1071 ARG1072 ASP1073 LYS1074 GLY1075 LYS1076 ASN1077 THR1078 VAL1079 TYR1080 LEU1081 GLN1082 MET1083 ASP1084 SER1085 LEU1086 LYS1087 PRO1088 GLU1089 ASP1090 THR1091 ALA1092 THR1093 TYR1094 TYR1095 CYS1096 ALA1097 ALA1098 GLY1099 GLY1100 TYR1101 GLU1102 LEU1103 ARG1104 ASP1105 ARG1106 THR1107 TYR1108 GLY1109 GLN1110 TRP1111 GLY1112 GLN1113 GLY1114 THR1115 GLN1116 VAL1117 THR1118 VAL1119 SER1120 SER1121 ARG1122 GLY1123 ARG1124
Unit 7 GLN1201 VAL1202 GLN1203 LEU1204 VAL1205 GLU1206 SER1207 GLY1208 GLY1209 GLY1210 LEU1211 VAL1212 GLN1213 ALA1214 GLY1215 GLY1216 SER1217 LEU1218 ARG1219 LEU1220 SER1221 CYS1222 ALA1223 ALA1224 SER1225 GLY1226 TYR1227 ALA1228 TYR1229 THR1230 TYR1231 ILE1232 TYR1233 MET1234 GLY1235 TRP1236 PHE1237 ARG1238 GLN1239 ALA1240 PRO1241 GLY1242 LYS1243 GLU1244 ARG1245 GLU1246 GLY1247 VAL1248 ALA1249 ALA1250 MET1251 ASP1252 SER1253 GLY1254 GLY1255 GLY1256 GLY1257 THR1258 LEU1259 TYR1260 ALA1261 ASP1262 SER1263 VAL1264 LYS1265 GLY1266 ARG1267 PHE1268 THR1269 ILE1270 SER1271 ARG1272 ASP1273 LYS1274 GLY1275 LYS1276 ASN1277 THR1278 VAL1279 TYR1280 LEU1281 GLN1282 MET1283 ASP1284 SER1285 LEU1286 LYS1287 PRO1288 GLU1289 ASP1290 THR1291 ALA1292 THR1293 TYR1294 TYR1295 CYS1296 ALA1297 ALA1298 GLY1299 GLY1300 TYR1301 GLU1302 LEU1303 ARG1304 ASP1305 ARG1306 THR1307 TYR1308 GLY1309 GLN1310 TRP1311 GLY1312 GLN1313 GLY1314 THR1315 GLN1316 VAL1317 THR1318 VAL1319 SER1320 SER1321 ARG1322 GLY1323 ARG1324
Unit 8 GLN1401 VAL1402 GLN1403 LEU1404 VAL1405 GLU1406 SER1407 GLY1408 GLY1409 GLY1410 LEU1411 VAL1412 GLN1413 ALA1414 GLY1415 GLY1416 SER1417 LEU1418 ARG1419 LEU1420 SER1421 CYS1422 ALA1423 ALA1424 SER1425 GLY1426 TYR1427 ALA1428 TYR1429 THR1430 TYR1431 ILE1432 TYR1433 MET1434 GLY1435 TRP1436 PHE1437 ARG1438 GLN1439 ALA1440 PRO1441 GLY1442 LYS1443 GLU1444 ARG1445 GLU1446 GLY1447 VAL1448 ALA1449 ALA1450 MET1451 ASP1452 SER1453 GLY1454 GLY1455 GLY1456 GLY1457 THR1458 LEU1459 TYR1460 ALA1461 ASP1462 SER1463 VAL1464 LYS1465 GLY1466 ARG1467 PHE1468 THR1469 ILE1470 SER1471 ARG1472 ASP1473 LYS1474 GLY1475 LYS1476 ASN1477 THR1478 VAL1479 TYR1480 LEU1481 GLN1482 MET1483 ASP1484 SER1485 LEU1486 LYS1487 PRO1488 GLU1489 ASP1490 THR1491 ALA1492 THR1493 TYR1494 TYR1495 CYS1496 ALA1497 ALA1498 GLY1499 GLY1500 TYR1501 GLU1502 LEU1503 ARG1504 ASP1505 ARG1506 THR1507 TYR1508 GLY1509 GLN1510 TRP1511 GLY1512 GLN1513 GLY1514 THR1515 GLN1516 VAL1517 THR1518 VAL1519 SER1520 SER1521 ARG1522 GLY1523 ARG1524

Ligands
Unit 9 PO42001
Unit 10 PO42002
Unit 11 PO42003
Unit 12 PO42004

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany