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Sequence, Chains, Asymmetric and Biological Units

Title RETINAL DEHYDROGENASE TYPE TWO WITH NAD BOUND
Keywords ALDEHYDE DEHYDROGENASE, RETINOID
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1BI9     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RETINAL DEHYDROGENASE TYPE II  A 478 3697 0
2  Protein   RETINAL DEHYDROGENASE TYPE II  B 477 3689 0
3  Protein   RETINAL DEHYDROGENASE TYPE II  C 480 3710 0
4  Protein   RETINAL DEHYDROGENASE TYPE II  D 482 3726 0
5  Ligand   RETINAL DEHYDROGENASE TYPE II  A 1 0 27
6  Ligand   RETINAL DEHYDROGENASE TYPE II  B 1 0 27
7  Ligand   RETINAL DEHYDROGENASE TYPE II  C 3 0 29
8  Ligand   RETINAL DEHYDROGENASE TYPE II  D 1 0 27
9 Water     224 0 224
total       2147 14822 334
Proteins
Unit 1 MET2 ALA3 SER4 LEU5 GLN6 LEU7 LEU8 PRO9 SER10 PRO11 THR12 PRO13 ASN14 LEU15 GLU16 ILE17 LYS18 TYR19 THR20 LYS21 ILE22 PHE23 ILE24 ASN25 ASN26 GLU27 TRP28 GLN29 ASN30 SER31 GLU32 SER33 GLY34 ARG35 VAL36 PHE37 PRO38 VAL39 CYS40 ASN41 PRO42 ALA43 THR44 GLY45 GLU46 GLN47 VAL48 CYS49 GLU50 VAL51 GLN52 GLU53 ALA54 ASP55 LYS56 VAL57 ASP58 ILE59 ASP60 LYS61 ALA62 VAL63 GLN64 ALA65 ALA66 ARG67 LEU68 ALA69 PHE70 SER71 LEU72 GLY73 SER74 VAL75 TRP76 ARG77 ARG78 MET79 ASP80 ALA81 SER82 GLU83 ARG84 GLY85 ARG86 LEU87 LEU88 ASP89 LYS90 LEU91 ALA92 ASP93 LEU94 VAL95 GLU96 ARG97 ASP98 ARG99 ALA100 THR101 LEU102 ALA103 THR104 MET105 GLU106 SER107 LEU108 ASN109 GLY110 GLY111 LYS112 PRO113 PHE114 LEU115 GLN116 ALA117 PHE118 TYR119 ILE120 ASP121 LEU122 GLN123 GLY124 VAL125 ILE126 LYS127 THR128 LEU129 ARG130 TYR131 TYR132 ALA133 GLY134 TRP135 ALA136 ASP137 LYS138 ILE139 HIS140 GLY141 MET142 THR143 ILE144 PRO145 VAL146 ASP147 GLY148 ASP149 TYR150 PHE151 THR152 PHE153 THR154 ARG155 HIS156 GLU157 PRO158 ILE159 GLY160 VAL161 CYS162 GLY163 GLN164 ILE165 ILE166 PRO167 TRP168 ASN169 PHE170 PRO171 LEU172 LEU173 MET174 PHE175 THR176 TRP177 LYS178 ILE179 ALA180 PRO181 ALA182 LEU183 CYS184 CYS185 GLY186 ASN187 THR188 VAL189 VAL190 ILE191 LYS192 PRO193 ALA194 GLU195 GLN196 THR197 PRO198 LEU199 SER200 ALA201 LEU202 TYR203 MET204 GLY205 ALA206 LEU207 ILE208 LYS209 GLU210 ALA211 GLY212 PHE213 PRO214 PRO215 GLY216 VAL217 VAL218 ASN219 ILE220 LEU221 PRO222 GLY223 TYR224 GLY225 PRO226 THR227 ALA228 GLY229 ALA230 ALA231 ILE232 ALA233 SER234 HIS235 ILE236 GLY237 ILE238 ASP239 LYS240 ILE241 ALA242 PHE243 THR244 GLY245 SER246 THR247 GLU248 VAL249 GLY250 LYS251 LEU252 ILE253 GLN254 GLU255 ALA256 ALA257 GLY258 ARG259 SER260 ASN261 LEU262 LYS263 ARG264 VAL265 THR266 LEU267 GLU268 LEU269 GLY270 GLY271 LYS272 SER273 PRO274 ASN275 ILE276 ILE277 PHE278 ALA279 ASP280 ALA281 ASP282 LEU283 ASP284 TYR285 ALA286 VAL287 GLU288 GLN289 ALA290 HIS291 GLN292 GLY293 VAL294 PHE295 PHE296 ASN297 GLN298 GLY299 GLN300 CYS301 CYS302 THR303 ALA304 GLY305 SER306 ARG307 ILE308 PHE309 VAL310 GLU311 GLU312 SER313 ILE314 TYR315 GLU316 GLU317 PHE318 VAL319 LYS320 ARG321 SER322 VAL323 GLU324 ARG325 ALA326 LYS327 ARG328 ARG329 ILE330 VAL331 GLY332 SER333 PRO334 PHE335 ASP336 PRO337 THR338 THR339 GLU340 GLN341 GLY342 PRO343 GLN344 ILE345 ASP346 LYS347 LYS348 GLN349 TYR350 ASN351 LYS352 ILE353 LEU354 GLU355 LEU356 ILE357 GLN358 SER359 GLY360 VAL361 ALA362 GLU363 GLY364 ALA365 LYS366 LEU367 GLU368 CYS369 GLY370 GLY371 LYS372 GLY373 LEU374 GLY375 ARG376 LYS377 GLY378 PHE379 PHE380 ILE381 GLU382 PRO383 THR384 VAL385 PHE386 SER387 ASN388 VAL389 THR390 ASP391 ASP392 MET393 ARG394 ILE395 ALA396 LYS397 GLU398 GLU399 ILE400 PHE401 GLY402 PRO403 VAL404 GLN405 GLU406 ILE407 LEU408 ARG409 PHE410 LYS411 THR412 MET413 ASP414 GLU415 VAL416 ILE417 GLU418 ARG419 ALA420 ASN421 ASN422 SER423 ASP424 PHE425 GLY426 LEU427 VAL428 ALA429 ALA430 VAL431 PHE432 THR433 ASN434 ASP435 ILE436 ASN437 LYS438 ALA439 LEU440 MET441 VAL442 SER443 SER444 ALA445 MET446 GLN447 ALA448 GLY449 THR450 VAL451 TRP452 ILE453 ASN454 CYS455 TYR456 GLY478 GLU479 PHE480 GLY481 LEU482 ARG483 GLU484 TYR485 SER486 GLU487 VAL488 LYS489 THR490 VAL491 THR492 VAL493 LYS494 ILE495 PRO496 GLN497 LYS498 ASN499 SER500
Unit 2 ALA3 SER4 LEU5 GLN6 LEU7 LEU8 PRO9 SER10 PRO11 THR12 PRO13 ASN14 LEU15 GLU16 ILE17 LYS18 TYR19 THR20 LYS21 ILE22 PHE23 ILE24 ASN25 ASN26 GLU27 TRP28 GLN29 ASN30 SER31 GLU32 SER33 GLY34 ARG35 VAL36 PHE37 PRO38 VAL39 CYS40 ASN41 PRO42 ALA43 THR44 GLY45 GLU46 GLN47 VAL48 CYS49 GLU50 VAL51 GLN52 GLU53 ALA54 ASP55 LYS56 VAL57 ASP58 ILE59 ASP60 LYS61 ALA62 VAL63 GLN64 ALA65 ALA66 ARG67 LEU68 ALA69 PHE70 SER71 LEU72 GLY73 SER74 VAL75 TRP76 ARG77 ARG78 MET79 ASP80 ALA81 SER82 GLU83 ARG84 GLY85 ARG86 LEU87 LEU88 ASP89 LYS90 LEU91 ALA92 ASP93 LEU94 VAL95 GLU96 ARG97 ASP98 ARG99 ALA100 THR101 LEU102 ALA103 THR104 MET105 GLU106 SER107 LEU108 ASN109 GLY110 GLY111 LYS112 PRO113 PHE114 LEU115 GLN116 ALA117 PHE118 TYR119 ILE120 ASP121 LEU122 GLN123 GLY124 VAL125 ILE126 LYS127 THR128 LEU129 ARG130 TYR131 TYR132 ALA133 GLY134 TRP135 ALA136 ASP137 LYS138 ILE139 HIS140 GLY141 MET142 THR143 ILE144 PRO145 VAL146 ASP147 GLY148 ASP149 TYR150 PHE151 THR152 PHE153 THR154 ARG155 HIS156 GLU157 PRO158 ILE159 GLY160 VAL161 CYS162 GLY163 GLN164 ILE165 ILE166 PRO167 TRP168 ASN169 PHE170 PRO171 LEU172 LEU173 MET174 PHE175 THR176 TRP177 LYS178 ILE179 ALA180 PRO181 ALA182 LEU183 CYS184 CYS185 GLY186 ASN187 THR188 VAL189 VAL190 ILE191 LYS192 PRO193 ALA194 GLU195 GLN196 THR197 PRO198 LEU199 SER200 ALA201 LEU202 TYR203 MET204 GLY205 ALA206 LEU207 ILE208 LYS209 GLU210 ALA211 GLY212 PHE213 PRO214 PRO215 GLY216 VAL217 VAL218 ASN219 ILE220 LEU221 PRO222 GLY223 TYR224 GLY225 PRO226 THR227 ALA228 GLY229 ALA230 ALA231 ILE232 ALA233 SER234 HIS235 ILE236 GLY237 ILE238 ASP239 LYS240 ILE241 ALA242 PHE243 THR244 GLY245 SER246 THR247 GLU248 VAL249 GLY250 LYS251 LEU252 ILE253 GLN254 GLU255 ALA256 ALA257 GLY258 ARG259 SER260 ASN261 LEU262 LYS263 ARG264 VAL265 THR266 LEU267 GLU268 LEU269 GLY270 GLY271 LYS272 SER273 PRO274 ASN275 ILE276 ILE277 PHE278 ALA279 ASP280 ALA281 ASP282 LEU283 ASP284 TYR285 ALA286 VAL287 GLU288 GLN289 ALA290 HIS291 GLN292 GLY293 VAL294 PHE295 PHE296 ASN297 GLN298 GLY299 GLN300 CYS301 CYS302 THR303 ALA304 GLY305 SER306 ARG307 ILE308 PHE309 VAL310 GLU311 GLU312 SER313 ILE314 TYR315 GLU316 GLU317 PHE318 VAL319 LYS320 ARG321 SER322 VAL323 GLU324 ARG325 ALA326 LYS327 ARG328 ARG329 ILE330 VAL331 GLY332 SER333 PRO334 PHE335 ASP336 PRO337 THR338 THR339 GLU340 GLN341 GLY342 PRO343 GLN344 ILE345 ASP346 LYS347 LYS348 GLN349 TYR350 ASN351 LYS352 ILE353 LEU354 GLU355 LEU356 ILE357 GLN358 SER359 GLY360 VAL361 ALA362 GLU363 GLY364 ALA365 LYS366 LEU367 GLU368 CYS369 GLY370 GLY371 LYS372 GLY373 LEU374 GLY375 ARG376 LYS377 GLY378 PHE379 PHE380 ILE381 GLU382 PRO383 THR384 VAL385 PHE386 SER387 ASN388 VAL389 THR390 ASP391 ASP392 MET393 ARG394 ILE395 ALA396 LYS397 GLU398 GLU399 ILE400 PHE401 GLY402 PRO403 VAL404 GLN405 GLU406 ILE407 LEU408 ARG409 PHE410 LYS411 THR412 MET413 ASP414 GLU415 VAL416 ILE417 GLU418 ARG419 ALA420 ASN421 ASN422 SER423 ASP424 PHE425 GLY426 LEU427 VAL428 ALA429 ALA430 VAL431 PHE432 THR433 ASN434 ASP435 ILE436 ASN437 LYS438 ALA439 LEU440 MET441 VAL442 SER443 SER444 ALA445 MET446 GLN447 ALA448 GLY449 THR450 VAL451 TRP452 ILE453 ASN454 CYS455 TYR456 GLY478 GLU479 PHE480 GLY481 LEU482 ARG483 GLU484 TYR485 SER486 GLU487 VAL488 LYS489 THR490 VAL491 THR492 VAL493 LYS494 ILE495 PRO496 GLN497 LYS498 ASN499 SER500
Unit 3 MET2 ALA3 SER4 LEU5 GLN6 LEU7 LEU8 PRO9 SER10 PRO11 THR12 PRO13 ASN14 LEU15 GLU16 ILE17 LYS18 TYR19 THR20 LYS21 ILE22 PHE23 ILE24 ASN25 ASN26 GLU27 TRP28 GLN29 ASN30 SER31 GLU32 SER33 GLY34 ARG35 VAL36 PHE37 PRO38 VAL39 CYS40 ASN41 PRO42 ALA43 THR44 GLY45 GLU46 GLN47 VAL48 CYS49 GLU50 VAL51 GLN52 GLU53 ALA54 ASP55 LYS56 VAL57 ASP58 ILE59 ASP60 LYS61 ALA62 VAL63 GLN64 ALA65 ALA66 ARG67 LEU68 ALA69 PHE70 SER71 LEU72 GLY73 SER74 VAL75 TRP76 ARG77 ARG78 MET79 ASP80 ALA81 SER82 GLU83 ARG84 GLY85 ARG86 LEU87 LEU88 ASP89 LYS90 LEU91 ALA92 ASP93 LEU94 VAL95 GLU96 ARG97 ASP98 ARG99 ALA100 THR101 LEU102 ALA103 THR104 MET105 GLU106 SER107 LEU108 ASN109 GLY110 GLY111 LYS112 PRO113 PHE114 LEU115 GLN116 ALA117 PHE118 TYR119 ILE120 ASP121 LEU122 GLN123 GLY124 VAL125 ILE126 LYS127 THR128 LEU129 ARG130 TYR131 TYR132 ALA133 GLY134 TRP135 ALA136 ASP137 LYS138 ILE139 HIS140 GLY141 MET142 THR143 ILE144 PRO145 VAL146 ASP147 GLY148 ASP149 TYR150 PHE151 THR152 PHE153 THR154 ARG155 HIS156 GLU157 PRO158 ILE159 GLY160 VAL161 CYS162 GLY163 GLN164 ILE165 ILE166 PRO167 TRP168 ASN169 PHE170 PRO171 LEU172 LEU173 MET174 PHE175 THR176 TRP177 LYS178 ILE179 ALA180 PRO181 ALA182 LEU183 CYS184 CYS185 GLY186 ASN187 THR188 VAL189 VAL190 ILE191 LYS192 PRO193 ALA194 GLU195 GLN196 THR197 PRO198 LEU199 SER200 ALA201 LEU202 TYR203 MET204 GLY205 ALA206 LEU207 ILE208 LYS209 GLU210 ALA211 GLY212 PHE213 PRO214 PRO215 GLY216 VAL217 VAL218 ASN219 ILE220 LEU221 PRO222 GLY223 TYR224 GLY225 PRO226 THR227 ALA228 GLY229 ALA230 ALA231 ILE232 ALA233 SER234 HIS235 ILE236 GLY237 ILE238 ASP239 LYS240 ILE241 ALA242 PHE243 THR244 GLY245 SER246 THR247 GLU248 VAL249 GLY250 LYS251 LEU252 ILE253 GLN254 GLU255 ALA256 ALA257 GLY258 ARG259 SER260 ASN261 LEU262 LYS263 ARG264 VAL265 THR266 LEU267 GLU268 LEU269 GLY270 GLY271 LYS272 SER273 PRO274 ASN275 ILE276 ILE277 PHE278 ALA279 ASP280 ALA281 ASP282 LEU283 ASP284 TYR285 ALA286 VAL287 GLU288 GLN289 ALA290 HIS291 GLN292 GLY293 VAL294 PHE295 PHE296 ASN297 GLN298 GLY299 GLN300 CYS301 CYS302 THR303 ALA304 GLY305 SER306 ARG307 ILE308 PHE309 VAL310 GLU311 GLU312 SER313 ILE314 TYR315 GLU316 GLU317 PHE318 VAL319 LYS320 ARG321 SER322 VAL323 GLU324 ARG325 ALA326 LYS327 ARG328 ARG329 ILE330 VAL331 GLY332 SER333 PRO334 PHE335 ASP336 PRO337 THR338 THR339 GLU340 GLN341 GLY342 PRO343 GLN344 ILE345 ASP346 LYS347 LYS348 GLN349 TYR350 ASN351 LYS352 ILE353 LEU354 GLU355 LEU356 ILE357 GLN358 SER359 GLY360 VAL361 ALA362 GLU363 GLY364 ALA365 LYS366 LEU367 GLU368 CYS369 GLY370 GLY371 LYS372 GLY373 LEU374 GLY375 ARG376 LYS377 GLY378 PHE379 PHE380 ILE381 GLU382 PRO383 THR384 VAL385 PHE386 SER387 ASN388 VAL389 THR390 ASP391 ASP392 MET393 ARG394 ILE395 ALA396 LYS397 GLU398 GLU399 ILE400 PHE401 GLY402 PRO403 VAL404 GLN405 GLU406 ILE407 LEU408 ARG409 PHE410 LYS411 THR412 MET413 ASP414 GLU415 VAL416 ILE417 GLU418 ARG419 ALA420 ASN421 ASN422 SER423 ASP424 PHE425 GLY426 LEU427 VAL428 ALA429 ALA430 VAL431 PHE432 THR433 ASN434 ASP435 ILE436 ASN437 LYS438 ALA439 LEU440 MET441 VAL442 SER443 SER444 ALA445 MET446 GLN447 ALA448 GLY449 THR450 VAL451 TRP452 ILE453 ASN454 CYS455 TYR456 ASN457 ALA458 GLY478 GLU479 PHE480 GLY481 LEU482 ARG483 GLU484 TYR485 SER486 GLU487 VAL488 LYS489 THR490 VAL491 THR492 VAL493 LYS494 ILE495 PRO496 GLN497 LYS498 ASN499 SER500
Unit 4 MET2 ALA3 SER4 LEU5 GLN6 LEU7 LEU8 PRO9 SER10 PRO11 THR12 PRO13 ASN14 LEU15 GLU16 ILE17 LYS18 TYR19 THR20 LYS21 ILE22 PHE23 ILE24 ASN25 ASN26 GLU27 TRP28 GLN29 ASN30 SER31 GLU32 SER33 GLY34 ARG35 VAL36 PHE37 PRO38 VAL39 CYS40 ASN41 PRO42 ALA43 THR44 GLY45 GLU46 GLN47 VAL48 CYS49 GLU50 VAL51 GLN52 GLU53 ALA54 ASP55 LYS56 VAL57 ASP58 ILE59 ASP60 LYS61 ALA62 VAL63 GLN64 ALA65 ALA66 ARG67 LEU68 ALA69 PHE70 SER71 LEU72 GLY73 SER74 VAL75 TRP76 ARG77 ARG78 MET79 ASP80 ALA81 SER82 GLU83 ARG84 GLY85 ARG86 LEU87 LEU88 ASP89 LYS90 LEU91 ALA92 ASP93 LEU94 VAL95 GLU96 ARG97 ASP98 ARG99 ALA100 THR101 LEU102 ALA103 THR104 MET105 GLU106 SER107 LEU108 ASN109 GLY110 GLY111 LYS112 PRO113 PHE114 LEU115 GLN116 ALA117 PHE118 TYR119 ILE120 ASP121 LEU122 GLN123 GLY124 VAL125 ILE126 LYS127 THR128 LEU129 ARG130 TYR131 TYR132 ALA133 GLY134 TRP135 ALA136 ASP137 LYS138 ILE139 HIS140 GLY141 MET142 THR143 ILE144 PRO145 VAL146 ASP147 GLY148 ASP149 TYR150 PHE151 THR152 PHE153 THR154 ARG155 HIS156 GLU157 PRO158 ILE159 GLY160 VAL161 CYS162 GLY163 GLN164 ILE165 ILE166 PRO167 TRP168 ASN169 PHE170 PRO171 LEU172 LEU173 MET174 PHE175 THR176 TRP177 LYS178 ILE179 ALA180 PRO181 ALA182 LEU183 CYS184 CYS185 GLY186 ASN187 THR188 VAL189 VAL190 ILE191 LYS192 PRO193 ALA194 GLU195 GLN196 THR197 PRO198 LEU199 SER200 ALA201 LEU202 TYR203 MET204 GLY205 ALA206 LEU207 ILE208 LYS209 GLU210 ALA211 GLY212 PHE213 PRO214 PRO215 GLY216 VAL217 VAL218 ASN219 ILE220 LEU221 PRO222 GLY223 TYR224 GLY225 PRO226 THR227 ALA228 GLY229 ALA230 ALA231 ILE232 ALA233 SER234 HIS235 ILE236 GLY237 ILE238 ASP239 LYS240 ILE241 ALA242 PHE243 THR244 GLY245 SER246 THR247 GLU248 VAL249 GLY250 LYS251 LEU252 ILE253 GLN254 GLU255 ALA256 ALA257 GLY258 ARG259 SER260 ASN261 LEU262 LYS263 ARG264 VAL265 THR266 LEU267 GLU268 LEU269 GLY270 GLY271 LYS272 SER273 PRO274 ASN275 ILE276 ILE277 PHE278 ALA279 ASP280 ALA281 ASP282 LEU283 ASP284 TYR285 ALA286 VAL287 GLU288 GLN289 ALA290 HIS291 GLN292 GLY293 VAL294 PHE295 PHE296 ASN297 GLN298 GLY299 GLN300 CYS301 CYS302 THR303 ALA304 GLY305 SER306 ARG307 ILE308 PHE309 VAL310 GLU311 GLU312 SER313 ILE314 TYR315 GLU316 GLU317 PHE318 VAL319 LYS320 ARG321 SER322 VAL323 GLU324 ARG325 ALA326 LYS327 ARG328 ARG329 ILE330 VAL331 GLY332 SER333 PRO334 PHE335 ASP336 PRO337 THR338 THR339 GLU340 GLN341 GLY342 PRO343 GLN344 ILE345 ASP346 LYS347 LYS348 GLN349 TYR350 ASN351 LYS352 ILE353 LEU354 GLU355 LEU356 ILE357 GLN358 SER359 GLY360 VAL361 ALA362 GLU363 GLY364 ALA365 LYS366 LEU367 GLU368 CYS369 GLY370 GLY371 LYS372 GLY373 LEU374 GLY375 ARG376 LYS377 GLY378 PHE379 PHE380 ILE381 GLU382 PRO383 THR384 VAL385 PHE386 SER387 ASN388 VAL389 THR390 ASP391 ASP392 MET393 ARG394 ILE395 ALA396 LYS397 GLU398 GLU399 ILE400 PHE401 GLY402 PRO403 VAL404 GLN405 GLU406 ILE407 LEU408 ARG409 PHE410 LYS411 THR412 MET413 ASP414 GLU415 VAL416 ILE417 GLU418 ARG419 ALA420 ASN421 ASN422 SER423 ASP424 PHE425 GLY426 LEU427 VAL428 ALA429 ALA430 VAL431 PHE432 THR433 ASN434 ASP435 ILE436 ASN437 LYS438 ALA439 LEU440 MET441 VAL442 SER443 SER444 ALA445 MET446 GLN447 ALA448 GLY449 THR450 VAL451 TRP452 ILE453 ASN454 CYS455 TYR456 ASN457 ALA458 LEU459 ASN460 GLY478 GLU479 PHE480 GLY481 LEU482 ARG483 GLU484 TYR485 SER486 GLU487 VAL488 LYS489 THR490 VAL491 THR492 VAL493 LYS494 ILE495 PRO496 GLN497 LYS498 ASN499 SER500
Ligands
Unit 5 NAD701
Unit 6 NAD702
Unit 7 CL503 CL504 NAD703
Unit 8 NAD704
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany