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Sequence, Chains, Asymmetric and Biological Units

Title MODEL OF RB69 DNA POLYMERASE WITH T7 DNA POLYMERASE PRIMER/ TEMPLATE
Keywords DNA POLYMERASE, HSV DNA POLYMERASE, ACYCLOVIR TRIPHOSPHATE
Experiment theoretical model
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1B1F     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROTEIN (DNA POLYMERASE)  R 405 1620 0
2  DNA    T 13 264 0
3  DNA    P 10 204 0
4  Ligand      1 0 28
total       429 2088 28

Proteins
Unit 1 PRO387 VAL388 GLN389 PRO390 TYR391 PRO392 GLY393 ALA394 PHE395 VAL396 LYS397 GLU398 PRO399 ILE400 PRO401 ASN402 ARG403 TYR404 LYS405 TYR406 VAL407 MET408 SER409 PHE410 ASP411 LEU412 THR413 SER414 LEU415 TYR416 PRO417 SER418 ILE419 ILE420 ARG421 GLN422 VAL423 ASN424 ILE425 SER426 PRO427 GLU428 THR429 ILE430 ALA431 GLY432 THR433 PHE434 LYS435 VAL436 ALA437 PRO438 LEU439 HIS440 ASP441 TYR442 ILE443 ASN444 ALA445 VAL446 ALA447 GLU448 ARG449 PRO450 SER451 ASP452 VAL453 TYR454 SER455 CYS456 SER457 PRO458 ASN459 GLY460 MET461 MET462 TYR463 TYR464 LYS465 ASP466 ARG467 ASP468 GLY469 VAL470 VAL471 VAL573 TRP574 PHE575 ARG576 TYR577 TYR578 ASP579 LEU580 ARG581 ASN582 ALA583 THR584 ALA585 ILE586 THR587 THR588 PHE589 GLY590 GLN591 MET592 ALA593 LEU594 GLN595 TRP596 ILE597 GLU598 ARG599 LYS600 VAL601 ASN602 GLU603 TYR604 LEU605 ASN606 GLU607 VAL608 CYS609 GLY610 THR611 GLU612 GLY613 GLU614 ALA615 PHE616 VAL617 LEU618 TYR619 GLY620 ASP621 THR622 ASP623 SER624 ILE625 TYR626 VAL627 SER628 ALA629 ASP630 LYS631 ILE632 ILE633 ASP634 LYS635 VAL636 GLY637 GLU638 SER639 LYS640 PHE641 ARG642 ASP643 THR644 ASN645 HIS646 TRP647 VAL648 ASP649 PHE650 LEU651 ASP652 LYS653 PHE654 ALA655 ARG656 GLU657 ARG658 MET659 GLU660 PRO661 ALA662 ILE663 ASP664 ARG665 GLY666 PHE667 ARG668 GLU669 MET670 CYS671 GLU672 TYR673 MET674 ASN675 ASN676 LYS677 GLN678 HIS679 LEU680 MET681 PHE682 MET683 ASP684 ARG685 GLU686 ALA687 ILE688 ALA689 GLY690 PRO691 PRO692 LEU693 GLY694 SER695 LYS696 GLY697 ILE698 GLY699 GLY700 PHE701 TRP702 THR703 GLY704 LYS705 LYS706 ARG707 TYR708 ALA709 LEU710 ASN711 VAL712 TRP713 ASP714 MET715 GLU716 GLY717 THR718 ARG719 TYR720 ALA721 GLU722 PRO723 LYS724 LEU725 LYS726 ILE727 MET728 GLY729 LEU730 GLU731 THR732 GLN733 LYS734 SER735 SER736 THR737 PRO738 LYS739 ALA740 VAL741 GLN742 LYS743 ALA744 LEU745 LYS746 GLU747 CYS748 ILE749 ARG750 ARG751 MET752 LEU753 GLN754 GLU755 GLY756 GLU757 GLU758 SER759 LEU760 GLN761 GLU762 TYR763 PHE764 LYS765 GLU766 PHE767 GLU768 LYS769 GLU770 PHE771 ARG772 GLN773 LEU774 ASN775 TYR776 ILE777 SER778 ILE779 ALA780 SER781 VAL782 SER783 SER784 ALA785 ASN786 ASN787 ILE788 ALA789 LYS790 TYR791 ASP792 VAL793 GLY794 GLY795 PHE796 PRO797 GLY798 PRO799 LYS800 CYS801 PRO802 PHE803 HIS804 ILE805 ARG806 GLY807 ILE808 LEU809 THR810 TYR811 ASN812 ARG813 ALA814 ILE815 LYS816 GLY817 ASN818 ILE819 ASP820 ALA821 PRO822 GLN823 VAL824 VAL825 GLU826 GLY827 GLU828 LYS829 VAL830 TYR831 VAL832 LEU833 PRO834 LEU835 ARG836 GLU837 GLY838 ASN839 PRO840 PHE841 GLY842 ASP843 LYS844 CYS845 ILE846 ALA847 TRP848 PRO849 SER850 GLY851 THR852 GLU853 ILE854 THR855 ASP856 LEU857 ILE858 LYS859 ASP860 ASP861 VAL862 LEU863 HIS864 TRP865 MET866 ASP867 TYR868 THR869 VAL870 LEU871 LEU872 GLU873 LYS874 THR875 PHE876 ILE877 LYS878 PRO879 LEU880 GLU881 GLY882 PHE883 THR884 SER885 ALA886 ALA887 LYS888 LEU889 ASP890 TYR891 GLU892

Nucleic acids
Unit 2 C3 C4 T5 T6 G7 G8 C9 A10 C11 T12 G13 G14 C15
Unit 3 G12 C13 C14 A15 G16 T17 G18 C19 C20 A21

Ligands
Unit 4 AVP950

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany