1AFV - Sequence, Chains, Asymmetric and Biological Units

• Title: HIV-1 CAPSID PROTEIN (P24) COMPLEX WITH FAB25.3
• Keywords: COMPLEX (VIRAL CAPSID/IMMUNOGLOBULIN), HIV, CAPSID PROTEIN, P24, VIRAL PROTEIN/IMMUNE SYSTEM COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1AFV	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN	A	151	1172	0
2	Protein	HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN	B	151	1172	0
3	Protein	ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN)	L	217	1667	0
4	Protein	ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN)	H	220	1672	0
5	Protein	ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN)	M	217	1667	0
6	Protein	ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN)	K	220	1672	0
7	Ligand	ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN)	L	1	0	1
8	Ligand	ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN)	M	1	0	1
total				1178	9022	2

Proteins

Unit 1	PRO 1 ILE 2 VAL 3 GLN 4 ASN 5 LEU 6 GLN 7 GLY 8 GLN 9 MET 10 VAL 11 HIS 12 GLN 13 ALA 14 ILE 15 SER 16 PRO 17 ARG 18 THR 19 LEU 20 ASN 21 ALA 22 TRP 23 VAL 24 LYS 25 VAL 26 VAL 27 GLU 28 GLU 29 LYS 30 ALA 31 PHE 32 SER 33 PRO 34 GLU 35 VAL 36 ILE 37 PRO 38 MET 39 PHE 40 SER 41 ALA 42 LEU 43 SER 44 GLU 45 GLY 46 ALA 47 THR 48 PRO 49 GLN 50 ASP 51 LEU 52 ASN 53 THR 54 MET 55 LEU 56 ASN 57 THR 58 VAL 59 GLY 60 GLY 61 HIS 62 GLN 63 ALA 64 ALA 65 MET 66 GLN 67 MET 68 LEU 69 LYS 70 GLU 71 THR 72 ILE 73 ASN 74 GLU 75 GLU 76 ALA 77 ALA 78 GLU 79 TRP 80 ASP 81 ARG 82 LEU 83 HIS 84 PRO 85 VAL 86 HIS 87 ALA 88 GLY 89 PRO 90 ILE 91 ALA 92 PRO 93 GLY 94 GLN 95 MET 96 ARG 97 GLU 98 PRO 99 ARG 100 GLY 101 SER 102 ASP 103 ILE 104 ALA 105 GLY 106 THR 107 THR 108 SER 109 THR 110 LEU 111 GLN 112 GLU 113 GLN 114 ILE 115 GLY 116 TRP 117 MET 118 THR 119 HIS 120 ASN 121 PRO 122 PRO 123 ILE 124 PRO 125 VAL 126 GLY 127 GLU 128 ILE 129 TYR 130 LYS 131 ARG 132 TRP 133 ILE 134 ILE 135 LEU 136 GLY 137 LEU 138 ASN 139 LYS 140 ILE 141 VAL 142 ARG 143 MET 144 TYR 145 SER 146 PRO 147 THR 148 SER 149 ILE 150 LEU 151
Unit 2	PRO 1 ILE 2 VAL 3 GLN 4 ASN 5 LEU 6 GLN 7 GLY 8 GLN 9 MET 10 VAL 11 HIS 12 GLN 13 ALA 14 ILE 15 SER 16 PRO 17 ARG 18 THR 19 LEU 20 ASN 21 ALA 22 TRP 23 VAL 24 LYS 25 VAL 26 VAL 27 GLU 28 GLU 29 LYS 30 ALA 31 PHE 32 SER 33 PRO 34 GLU 35 VAL 36 ILE 37 PRO 38 MET 39 PHE 40 SER 41 ALA 42 LEU 43 SER 44 GLU 45 GLY 46 ALA 47 THR 48 PRO 49 GLN 50 ASP 51 LEU 52 ASN 53 THR 54 MET 55 LEU 56 ASN 57 THR 58 VAL 59 GLY 60 GLY 61 HIS 62 GLN 63 ALA 64 ALA 65 MET 66 GLN 67 MET 68 LEU 69 LYS 70 GLU 71 THR 72 ILE 73 ASN 74 GLU 75 GLU 76 ALA 77 ALA 78 GLU 79 TRP 80 ASP 81 ARG 82 LEU 83 HIS 84 PRO 85 VAL 86 HIS 87 ALA 88 GLY 89 PRO 90 ILE 91 ALA 92 PRO 93 GLY 94 GLN 95 MET 96 ARG 97 GLU 98 PRO 99 ARG 100 GLY 101 SER 102 ASP 103 ILE 104 ALA 105 GLY 106 THR 107 THR 108 SER 109 THR 110 LEU 111 GLN 112 GLU 113 GLN 114 ILE 115 GLY 116 TRP 117 MET 118 THR 119 HIS 120 ASN 121 PRO 122 PRO 123 ILE 124 PRO 125 VAL 126 GLY 127 GLU 128 ILE 129 TYR 130 LYS 131 ARG 132 TRP 133 ILE 134 ILE 135 LEU 136 GLY 137 LEU 138 ASN 139 LYS 140 ILE 141 VAL 142 ARG 143 MET 144 TYR 145 SER 146 PRO 147 THR 148 SER 149 ILE 150 LEU 151
Unit 3	ASP 1 ILE 2 VAL 3 LEU 4 THR 5 GLN 6 SER 7 PRO 8 ALA 9 SER 10 LEU 11 ALA 12 VAL 13 SER 14 LEU 15 GLY 16 GLN 17 ARG 18 ALA 19 THR 20 ILE 21 SER 22 CYS 23 ARG 24 ALA 25 SER 26 GLU 27 SER 28 VAL 29 ASP 30 ASN 31 TYR 32 GLY 33 ILE 34 SER 35 PHE 36 MET 37 ASN 38 TRP 39 PHE 40 GLN 41 GLN 42 LYS 43 PRO 44 GLY 45 GLN 46 PRO 47 PRO 48 LYS 49 LEU 50 LEU 51 ILE 52 TYR 53 ALA 54 ALA 55 SER 56 ASN 57 LEU 58 GLY 59 SER 60 GLY 61 VAL 62 PRO 63 ALA 64 ARG 65 PHE 66 SER 67 GLY 68 SER 69 GLY 70 SER 71 GLY 72 THR 73 ASP 74 PHE 75 SER 76 LEU 77 ASN 78 ILE 79 HIS 80 PRO 81 MET 82 GLU 83 GLU 84 GLU 85 ASP 86 THR 87 ALA 88 MET 89 TYR 90 PHE 91 CYS 92 GLN 93 GLN 94 SER 95 LYS 96 GLU 97 VAL 98 PRO 99 LEU 100 THR 101 PHE 102 GLY 103 ALA 104 GLY 105 THR 106 LYS 107 VAL 108 GLU 109 LEU 110 LYS 111 ARG 112 ALA 113 ASP 114 ALA 115 ALA 116 PRO 117 THR 118 VAL 119 SER 120 ILE 121 PHE 122 PRO 123 PRO 124 SER 125 SER 126 GLU 127 GLN 128 LEU 129 THR 130 SER 131 GLY 132 GLY 133 ALA 134 SER 135 VAL 136 VAL 137 CYS 138 PHE 139 LEU 140 ASN 141 ASN 142 PHE 143 TYR 144 PRO 145 LYS 146 ASP 147 ILE 148 ASN 149 VAL 150 LYS 151 TRP 152 LYS 153 ILE 154 ASP 155 GLY 156 SER 157 GLU 158 ARG 159 GLN 160 ASN 161 GLY 162 VAL 163 LEU 164 ASN 165 SER 166 TRP 167 THR 168 ASP 169 GLN 170 ASP 171 SER 172 LYS 173 ASP 174 SER 175 THR 176 TYR 177 SER 178 MET 179 SER 180 SER 181 THR 182 LEU 183 THR 184 LEU 185 THR 186 LYS 187 ASP 188 GLU 189 TYR 190 GLU 191 ARG 192 HIS 193 ASN 194 SER 195 TYR 196 THR 197 CYS 198 GLU 199 ALA 200 THR 201 HIS 202 LYS 203 THR 204 SER 205 THR 206 SER 207 PRO 208 ILE 209 VAL 210 LYS 211 SER 212 PHE 213 ASN 214 ARG 215 ASN 216 GLU 217
Unit 4	GLN 1 VAL 2 GLN 3 LEU 4 GLN 5 GLN 6 PRO 7 GLY 8 SER 9 VAL 10 LEU 11 VAL 12 ARG 13 PRO 14 GLY 15 ALA 16 SER 17 VAL 18 LYS 19 LEU 20 SER 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 TYR 27 THR 28 PHE 29 THR 30 SER 31 SER 32 TRP 33 ILE 34 HIS 35 TRP 36 ALA 37 LYS 38 GLN 39 ARG 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 TRP 47 ILE 48 GLY 49 GLU 50 ILE 51 HIS 52 PRO 53 ASN 54 SER 55 GLY 56 ASN 57 THR 58 ASN 59 TYR 60 ASN 61 GLU 62 LYS 63 PHE 64 LYS 65 GLY 66 LYS 67 ALA 68 THR 69 LEU 70 THR 71 VAL 72 ASP 73 THR 74 SER 75 SER 76 SER 77 THR 78 ALA 79 TYR 80 VAL 81 ASP 82 LEU 83 SER 84 SER 85 LEU 86 THR 87 SER 88 GLU 89 ASP 90 SER 91 ALA 92 VAL 93 TYR 94 TYR 95 CYS 96 ALA 97 ARG 98 TRP 99 ARG 100 TYR 101 GLY 102 SER 103 PRO 104 TYR 105 TYR 106 PHE 107 ASP 108 TYR 109 TRP 110 GLY 111 GLN 112 GLY 113 THR 114 THR 115 LEU 116 THR 117 VAL 118 SER 119 SER 120 ALA 121 LYS 122 THR 123 THR 124 PRO 125 PRO 126 SER 127 VAL 128 TYR 129 PRO 130 LEU 131 ALA 132 PRO 133 GLY 134 SER 135 ALA 136 ALA 137 GLN 138 THR 139 ASN 140 SER 141 MET 142 VAL 143 THR 144 LEU 145 GLY 146 CYS 147 LEU 148 VAL 149 LYS 150 GLY 151 TYR 152 PHE 153 PRO 154 GLU 155 PRO 156 VAL 157 THR 158 VAL 159 THR 160 TRP 161 ASN 162 SER 163 GLY 164 SER 165 LEU 166 SER 167 SER 168 GLY 169 VAL 170 HIS 171 THR 172 PHE 173 PRO 174 ALA 175 VAL 176 LEU 177 GLN 178 SER 179 ASP 180 LEU 181 TYR 182 THR 183 LEU 184 SER 185 SER 186 SER 187 VAL 188 THR 189 VAL 190 PRO 191 SER 192 SER 193 THR 194 TRP 195 PRO 196 SER 197 GLU 198 THR 199 VAL 200 THR 201 CYS 202 ASN 203 VAL 204 ALA 205 HIS 206 PRO 207 ALA 208 SER 209 SER 210 THR 211 LYS 212 VAL 213 ASP 214 LYS 215 LYS 216 ILE 217 VAL 218 PRO 219 LYS 220
Unit 5	ASP 1 ILE 2 VAL 3 LEU 4 THR 5 GLN 6 SER 7 PRO 8 ALA 9 SER 10 LEU 11 ALA 12 VAL 13 SER 14 LEU 15 GLY 16 GLN 17 ARG 18 ALA 19 THR 20 ILE 21 SER 22 CYS 23 ARG 24 ALA 25 SER 26 GLU 27 SER 28 VAL 29 ASP 30 ASN 31 TYR 32 GLY 33 ILE 34 SER 35 PHE 36 MET 37 ASN 38 TRP 39 PHE 40 GLN 41 GLN 42 LYS 43 PRO 44 GLY 45 GLN 46 PRO 47 PRO 48 LYS 49 LEU 50 LEU 51 ILE 52 TYR 53 ALA 54 ALA 55 SER 56 ASN 57 LEU 58 GLY 59 SER 60 GLY 61 VAL 62 PRO 63 ALA 64 ARG 65 PHE 66 SER 67 GLY 68 SER 69 GLY 70 SER 71 GLY 72 THR 73 ASP 74 PHE 75 SER 76 LEU 77 ASN 78 ILE 79 HIS 80 PRO 81 MET 82 GLU 83 GLU 84 GLU 85 ASP 86 THR 87 ALA 88 MET 89 TYR 90 PHE 91 CYS 92 GLN 93 GLN 94 SER 95 LYS 96 GLU 97 VAL 98 PRO 99 LEU 100 THR 101 PHE 102 GLY 103 ALA 104 GLY 105 THR 106 LYS 107 VAL 108 GLU 109 LEU 110 LYS 111 ARG 112 ALA 113 ASP 114 ALA 115 ALA 116 PRO 117 THR 118 VAL 119 SER 120 ILE 121 PHE 122 PRO 123 PRO 124 SER 125 SER 126 GLU 127 GLN 128 LEU 129 THR 130 SER 131 GLY 132 GLY 133 ALA 134 SER 135 VAL 136 VAL 137 CYS 138 PHE 139 LEU 140 ASN 141 ASN 142 PHE 143 TYR 144 PRO 145 LYS 146 ASP 147 ILE 148 ASN 149 VAL 150 LYS 151 TRP 152 LYS 153 ILE 154 ASP 155 GLY 156 SER 157 GLU 158 ARG 159 GLN 160 ASN 161 GLY 162 VAL 163 LEU 164 ASN 165 SER 166 TRP 167 THR 168 ASP 169 GLN 170 ASP 171 SER 172 LYS 173 ASP 174 SER 175 THR 176 TYR 177 SER 178 MET 179 SER 180 SER 181 THR 182 LEU 183 THR 184 LEU 185 THR 186 LYS 187 ASP 188 GLU 189 TYR 190 GLU 191 ARG 192 HIS 193 ASN 194 SER 195 TYR 196 THR 197 CYS 198 GLU 199 ALA 200 THR 201 HIS 202 LYS 203 THR 204 SER 205 THR 206 SER 207 PRO 208 ILE 209 VAL 210 LYS 211 SER 212 PHE 213 ASN 214 ARG 215 ASN 216 GLU 217
Unit 6	GLN 1 VAL 2 GLN 3 LEU 4 GLN 5 GLN 6 PRO 7 GLY 8 SER 9 VAL 10 LEU 11 VAL 12 ARG 13 PRO 14 GLY 15 ALA 16 SER 17 VAL 18 LYS 19 LEU 20 SER 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 TYR 27 THR 28 PHE 29 THR 30 SER 31 SER 32 TRP 33 ILE 34 HIS 35 TRP 36 ALA 37 LYS 38 GLN 39 ARG 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 TRP 47 ILE 48 GLY 49 GLU 50 ILE 51 HIS 52 PRO 53 ASN 54 SER 55 GLY 56 ASN 57 THR 58 ASN 59 TYR 60 ASN 61 GLU 62 LYS 63 PHE 64 LYS 65 GLY 66 LYS 67 ALA 68 THR 69 LEU 70 THR 71 VAL 72 ASP 73 THR 74 SER 75 SER 76 SER 77 THR 78 ALA 79 TYR 80 VAL 81 ASP 82 LEU 83 SER 84 SER 85 LEU 86 THR 87 SER 88 GLU 89 ASP 90 SER 91 ALA 92 VAL 93 TYR 94 TYR 95 CYS 96 ALA 97 ARG 98 TRP 99 ARG 100 TYR 101 GLY 102 SER 103 PRO 104 TYR 105 TYR 106 PHE 107 ASP 108 TYR 109 TRP 110 GLY 111 GLN 112 GLY 113 THR 114 THR 115 LEU 116 THR 117 VAL 118 SER 119 SER 120 ALA 121 LYS 122 THR 123 THR 124 PRO 125 PRO 126 SER 127 VAL 128 TYR 129 PRO 130 LEU 131 ALA 132 PRO 133 GLY 134 SER 135 ALA 136 ALA 137 GLN 138 THR 139 ASN 140 SER 141 MET 142 VAL 143 THR 144 LEU 145 GLY 146 CYS 147 LEU 148 VAL 149 LYS 150 GLY 151 TYR 152 PHE 153 PRO 154 GLU 155 PRO 156 VAL 157 THR 158 VAL 159 THR 160 TRP 161 ASN 162 SER 163 GLY 164 SER 165 LEU 166 SER 167 SER 168 GLY 169 VAL 170 HIS 171 THR 172 PHE 173 PRO 174 ALA 175 VAL 176 LEU 177 GLN 178 SER 179 ASP 180 LEU 181 TYR 182 THR 183 LEU 184 SER 185 SER 186 SER 187 VAL 188 THR 189 VAL 190 PRO 191 SER 192 SER 193 THR 194 TRP 195 PRO 196 SER 197 GLU 198 THR 199 VAL 200 THR 201 CYS 202 ASN 203 VAL 204 ALA 205 HIS 206 PRO 207 ALA 208 SER 209 SER 210 THR 211 LYS 212 VAL 213 ASP 214 LYS 215 LYS 216 ILE 217 VAL 218 PRO 219 LYS 220

Ligands

Unit 7	PB 218
Unit 8	PB 218