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(-) Description

Title :  RNA POLYMERASE II ELONGATION COMPLEX
 
Authors :  A. L. Gnatt, P. Cramer, R. D. Kornberg
Date :  02 Mar 01  (Deposition) - 23 Apr 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,H,I,J,K,L,R
Keywords :  Transcription, Mrna, Multiprotein Complex, Molecular Machine, Dna, Transcription/Dna/Rna Complex, Transcription/Dna-Rna Hybrid Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. L. Gnatt, P. Cramer, J. Fu, D. A. Bushnell, R. D. Kornberg
Structural Basis Of Transcription: An Rna Polymerase Ii Elongation Complex At 3. 3 A Resolution.
Science V. 292 1876 2001
PubMed-ID: 11313499  |  Reference-DOI: 10.1126/SCIENCE.1059495
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(P*AP*AP*AP*TP*GP*CP*CP*TP*GP*GP*TP*CP*T)-3'
    ChainsD
    EngineeredYES
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    Other DetailsTEMPLATE
 
Molecule 2 - 5'-R(P*GP*AP*CP*CP*AP*GP*GP*CP*A)-3'
    ChainsR
    EngineeredYES
    Other DetailsTRANSCRIPT
    Other Details - SourceTHE RNA WAS SYNTHESIZED BY THE POLYMERASE BEFORE THE CRYSTAL WAS FORMED.
    SyntheticYES
 
Molecule 3 - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
    ChainsA
    EC Number2.7.7.6
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainDELTA-RPB4
    SynonymRPB1
 
Molecule 4 - DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE
    ChainsB
    EC Number2.7.7.6
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainDELTA-RPB4
    SynonymRPB2
 
Molecule 5 - DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE
    ChainsC
    EC Number2.7.7.6
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainDELTA-RPB4
    SynonymRPB3
 
Molecule 6 - DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE
    ChainsE
    EC Number2.7.7.6
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainDELTA-RPB4
    SynonymRPB5
 
Molecule 7 - DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE
    ChainsF
    EC Number2.7.7.6
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainDELTA-RPB4
    SynonymRPB6
 
Molecule 8 - DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE
    ChainsH
    EC Number2.7.7.6
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainDELTA-RPB4
    SynonymRPB8
 
Molecule 9 - DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE
    ChainsI
    EC Number2.7.7.6
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainDELTA-RPB4
    SynonymRPB9
 
Molecule 10 - DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE
    ChainsJ
    EC Number2.7.7.6
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainDELTA-RPB4
    SynonymRPB10
 
Molecule 11 - DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE
    ChainsK
    EC Number2.7.7.6
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainDELTA-RPB4
    SynonymRPB11
 
Molecule 12 - DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE
    ChainsL
    EC Number2.7.7.6
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainDELTA-RPB4
    SynonymRPB12

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit ABCDEFHIJKLR

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2ZN8Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS J:7 , CYS J:10 , CYS J:45 , CYS J:46BINDING SITE FOR RESIDUE ZN J 101
2AC2SOFTWARECYS C:86 , CYS C:88 , CYS C:92 , CYS C:95BINDING SITE FOR RESIDUE ZN C 319
3AC3SOFTWARECYS I:7 , CYS I:10 , CYS I:29 , THR I:31 , CYS I:32BINDING SITE FOR RESIDUE ZN I 203
4AC4SOFTWARECYS I:75 , CYS I:78 , CYS I:103 , CYS I:106BINDING SITE FOR RESIDUE ZN I 204
5AC5SOFTWARECYS L:31 , CYS L:34 , CYS L:48 , CYS L:51BINDING SITE FOR RESIDUE ZN L 105
6AC6SOFTWARECYS A:110 , CYS A:167BINDING SITE FOR RESIDUE ZN A 1734
7AC7SOFTWARECYS B:1163 , CYS B:1166 , CYS B:1182 , CYS B:1185BINDING SITE FOR RESIDUE ZN B 1307
8AC8SOFTWARECYS A:67 , CYS A:70 , CYS A:77 , HIS A:80BINDING SITE FOR RESIDUE ZN A 1735
9AC9SOFTWAREASP A:481 , ASP A:483 , ASP A:485 , C R:8 , A R:9BINDING SITE FOR RESIDUE MG R 10

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1I6H)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gln A:447 -Pro A:448
2Pro E:128 -Pro E:129

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

Asymmetric/Biological Unit (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_RPB3_YEAST_001 *A30DRPB3_YEAST  ---  ---CA30D
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (9, 9)

Asymmetric/Biological Unit (9, 9)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RNA_POL_N_8KDPS01112 RNA polymerases N / 8 Kd subunits signature.RPAB5_YEAST2-11  1J:2-11
2RNA_POL_M_15KDPS01030 RNA polymerases M / 15 Kd subunits signature.RPB9_YEAST6-32  1I:6-32
3RNA_POL_D_30KDPS00446 RNA polymerases D / 30 to 40 Kd subunits signature.RPB3_YEAST31-71  1C:31-71
4RNA_POL_L_13KDPS01154 RNA polymerases L / 13 to 16 Kd subunits signature.RPB11_YEAST35-66  1K:35-66
5ZF_TFIIS_2PS51133 Zinc finger TFIIS-type profile.RPB9_YEAST71-111  1I:71-111
6ZF_TFIIS_1PS00466 Zinc finger TFIIS-type signature.RPB9_YEAST75-110  1I:75-110
7RNA_POL_K_14KDPS01111 RNA polymerases K / 14 to 18 Kd subunits signature.RPAB2_YEAST86-100  1F:86-100
8RNA_POL_H_23KDPS01110 RNA polymerases H / 23 Kd subunits signature.RPAB1_YEAST147-160  1E:147-160
9RNA_POL_BETAPS01166 RNA polymerases beta chain signature.RPB2_YEAST977-989  1B:977-989

(-) Exons   (7, 7)

Asymmetric/Biological Unit (7, 7)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YBR154C1YBR154C.1II:549003-548356648RPAB1_YEAST1-2152151E:2-215214

2.1YDL140C1YDL140C.1IV:210562-2053615202RPB1_YEAST1-173317331A:2-1445 (gaps)1444

3.1YHR143W-A1YHR143W-A.1VIII:387236-387448213RPAB4_YEAST1-70701L:25-7046

4.1YIL021W1YIL021W.1IX:312903-313859957RPB3_YEAST1-3183181C:3-268266

5.1YOR151C1YOR151C.1XV:616672-6129983675RPB2_YEAST1-122412241B:20-1224 (gaps)1205

6.1YOR210W1YOR210W.1XV:738321-738533213RPAB5_YEAST1-70701J:1-6565

7.1YPR187W1YPR187W.1XVI:911253-91127220RPAB2_YEAST1-770--
7.2YPR187W2YPR187W.2XVI:911349-911796448RPAB2_YEAST7-1551491F:72-15584

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:1381
 aligned with RPB1_YEAST | P04050 from UniProtKB/Swiss-Prot  Length:1733

    Alignment length:1444
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381      1391      1401      1411      1421      1431      1441    
          RPB1_YEAST      2 VGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMI 1445
               SCOP domains d1i6ha_ A: RBP1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........................................................................................................................................................------..........................------------...................................................---------........................................................------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................----------.....................................................................................----------.........................................................----------................................................................................................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 2 Exon 2.1  PDB: A:2-1445 (gaps) UniProt: 1-1733 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Transcript 2
                1i6h A    2 VGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPS------LVSRGGCGNTQPTIRKDGLKLVGSWK------------LRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPS---------EDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQA------PVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTL----------KKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSL----------QQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVV----------AEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMI 1445
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151  |    161       171       181    |    -       201       211       221       231       241       | -       261       271       281       291       301       311  |    321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081         -|     1101      1111      1121      1131      1141      1151      1161      1171    |    -     |1191      1201      1211      1221      1231      1241 |       -  |   1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381      1391      1401      1411      1421      1431      1441    
                                                                                                                                                                                  154    161                      186          199                                               249       259                                                    314    321                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    1081       1092                                                                                1176       1187                                                    1243       1254                                                                                                                                                                                               

Chain B from PDB  Type:PROTEIN  Length:1097
 aligned with RPB2_YEAST | P08518 from UniProtKB/Swiss-Prot  Length:1224

    Alignment length:1205
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      1159      1169      1179      1189      1199      1209      1219     
          RPB2_YEAST     20 DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTDRSRDF 1224
               SCOP domains d1i6hb_ B: RBP2                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------                   ---------------------------------------------                             ---------------------------------------------------------1i6hB04 B:221-397  [code=3.90.1110.10, no name defined]                                                                                                                          ----------------------------------------        ----------------------         --------------------------      ----------------------------------------------------------------------------------------------------------------------------------------------------------------         --------------------------------------      -------------------------------------------------------------1i6hB07         ------------------------------------------------------1i6hB07 B:783-798,B:853-973  [code=2.40.50.150, no name defined]                                                         ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................................................-------------------.............................................-----------------------------............................................................................................................................................................................---------.............................................................................................--------......................---------..........................------................................................................................................................................................................---------......................................------......................................................................................................................................................................................................-------------.................................................................................................................................................................................................................................................................................................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNA_POL_BETA ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 5 Exon 5.1  PDB: B:20-1224 (gaps) UniProt: 1-1224 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Transcript 5
                1i6h B   20 DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLI-------------------ISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKK-----------------------------KVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIG---------KEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVE--------LAINAKTITSGLKYALATGNWG---------AGVSQVLNRYTYSSTLSHLRRTNTPI------AKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQD---------EYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEA------DVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPIS-------------SKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTDRSRDF 1224
                                    29        39        49        59        69|        -         -|       99       109       119       129    |    -         -         -    |  169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329     |   -     | 349       359       369       379       389       399       409       419       429       | -      |449       459       | -       479       489       499  |    509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659        |-       679       689       699       709     |   -  |    729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899       909       919         -   |   939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      1159      1169      1179      1189      1199      1209      1219     
                                                                             70                  90                                         134                           164                                                                                                                                                                        335       345                                                                                         437      446                  467       477                      502    509                                                                                                                                                            668       678                                  715    722                                                                                                                                                                                                  919           933                                                                                                                                                                                                                                                                                                   

Chain C from PDB  Type:PROTEIN  Length:266
 aligned with RPB3_YEAST | P16370 from UniProtKB/Swiss-Prot  Length:318

    Alignment length:266
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262      
          RPB3_YEAST      3 EEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD  268
               SCOP domains d1i6hc1 C:3-41,C:173-268 RPB3          d1i6hc2 C:42-172 RPB3                                                                                                              d1i6hc1 C:3-41,C:173-268 RPB3                                                                    SCOP domains
               CATH domains 1i6hC02 C:3-42,C:169-268                1i6hC01 C:43-168 RNA Polymerase Alpha Subunit; Chain A, domain 2                                                              1i6hC02 C:3-42,C:169-268  [code=3.30.1360.10, no name defined]                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................................................................................................................................................................................................................................................................... Sec.struct. author
                 SAPs(SNPs) ---------------------------D---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------RNA_POL_D_30KD  PDB: C:31-71             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 4 Exon 4.1  PDB: C:3-268 UniProt: 1-318 [INCOMPLETE]                                                                                                                                                                                                                         Transcript 4
                1i6h C    3 EEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD  268
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262      

Chain D from PDB  Type:DNA  Length:13
                                              
                1i6h D    1 AAATGCCTGGTCT   13
                                    10   

Chain E from PDB  Type:PROTEIN  Length:214
 aligned with RPAB1_YEAST | P20434 from UniProtKB/Swiss-Prot  Length:215

    Alignment length:214
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211    
         RPAB1_YEAST      2 DQENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM  215
               SCOP domains d1i6he1 E:2-143 Eukaryotic RPB5 N-terminal domain                                                                                             d1i6he2 E:144-215 Eukaryotic RPB5 C-terminal domain                      SCOP domains
               CATH domains ---1i6hE01 E:5-142  [code=3.40.1340.10, no name defined]                                                                                     1i6hE02 E:143-215  [code=3.90.940.20, no name defined]                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................................................................................................................................................................................................................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------RNA_POL_H_23KD------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: E:2-215 UniProt: 1-215 [INCOMPLETE]                                                                                                                                                                     Transcript 1
                1i6h E    2 DQENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM  215
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211    

Chain F from PDB  Type:PROTEIN  Length:84
 aligned with RPAB2_YEAST | P20435 from UniProtKB/Swiss-Prot  Length:155

    Alignment length:84
                                    81        91       101       111       121       131       141       151    
         RPAB2_YEAST     72 KAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL  155
               SCOP domains d1i6hf_ F: RPB6                                                                      SCOP domains
               CATH domains 1i6hF00 F:72-155  [code=3.90.940.10, no name defined]                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) --------------RNA_POL_K_14KD ------------------------------------------------------- PROSITE (2)
               Transcript 7 Exon 7.2  PDB: F:72-155 UniProt: 7-155 [INCOMPLETE]                                  Transcript 7
                1i6h F   72 KAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL  155
                                    81        91       101       111       121       131       141       151    

Chain H from PDB  Type:PROTEIN  Length:133
 aligned with RPAB3_YEAST | P20436 from UniProtKB/Swiss-Prot  Length:146

    Alignment length:145
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141     
         RPAB3_YEAST      2 SNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIASSLNLEDTPANDSSATRSWRPPQAGDRSLADDYDYVMYGTAYKFEEVSKDLIAVYYSFGGLLMRLEGNYRNLNNLKQENAYLLIRR  146
               SCOP domains d1i6hh_ H: RNA polymerase subunit RBP8                                                                                                            SCOP domains
               CATH domains 1i6hH00 H:2-146 Nucleic acid-binding proteins                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............................................................------------....................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1i6h H    2 SNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIASSL------------TRSWRPPQAGDRSLADDYDYVMYGTAYKFEEVSKDLIAVYYSFGGLLMRLEGNYRNLNNLKQENAYLLIRR  146
                                    11        21        31        41        51        61 |       -    |   81        91       101       111       121       131       141     
                                                                                        63           76                                                                      

Chain I from PDB  Type:PROTEIN  Length:119
 aligned with RPB9_YEAST | P27999 from UniProtKB/Swiss-Prot  Length:122

    Alignment length:119
                                    11        21        31        41        51        61        71        81        91       101       111         
          RPB9_YEAST      2 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQKNKRTQ  120
               SCOP domains d1i6hi1 I:2-49 RBP9 subunit of RNA polymerase IId1i6hi2 I:50-120 RBP9 subunit of RNA polymerase II                      SCOP domains
               CATH domains 1i6hI02 I:2-46                               1i6hI01 I:47-120  [code=2.20.25.10, no name defined]                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................................................................................................................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----RNA_POL_M_15KD  PDB: I:6-32--------------------------------------ZF_TFIIS_2  PDB: I:71-111 UniProt: 71-111--------- PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------ZF_TFIIS_1  PDB: I:75-110           ---------- PROSITE (1)
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                1i6h I    2 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQKNKRTQ  120
                                    11        21        31        41        51        61        71        81        91       101       111         

Chain J from PDB  Type:PROTEIN  Length:65
 aligned with RPAB5_YEAST | P22139 from UniProtKB/Swiss-Prot  Length:70

    Alignment length:65
                                    10        20        30        40        50        60     
         RPAB5_YEAST      1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKFLRYNP   65
               SCOP domains d1i6hj_ J: RNA polymerase subunit RPB10                           SCOP domains
               CATH domains 1i6hJ00 J:1-65 Homeodomain-like                                   CATH domains
               Pfam domains ----------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................................................. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -RNA_POL_N_------------------------------------------------------ PROSITE
               Transcript 6 Exon 6.1  PDB: J:1-65 UniProt: 1-70 [INCOMPLETE]                  Transcript 6
                1i6h J    1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKFLRYNP   65
                                    10        20        30        40        50        60     

Chain K from PDB  Type:PROTEIN  Length:114
 aligned with RPB11_YEAST | P38902 from UniProtKB/Swiss-Prot  Length:120

    Alignment length:114
                                    10        20        30        40        50        60        70        80        90       100       110    
         RPB11_YEAST      1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTL  114
               SCOP domains d1i6hk_ K: RPB11                                                                                                   SCOP domains
               CATH domains 1i6hK00 K:1-114  [code=3.30.1360.10, no name defined]                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .................................................................................................................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ----------------------------------RNA_POL_L_13KD  PDB: K:35-66    ------------------------------------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                1i6h K    1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTL  114
                                    10        20        30        40        50        60        70        80        90       100       110    

Chain L from PDB  Type:PROTEIN  Length:46
 aligned with RPAB4_YEAST | P40422 from UniProtKB/Swiss-Prot  Length:70

    Alignment length:46
                                    34        44        54        64      
         RPAB4_YEAST     25 ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR   70
               SCOP domains d1i6hl_ L: RBP12 subunit of RNA polymerase II  SCOP domains
               CATH domains 1i6hL00 L:25-70 RNA polymerase ii, chain L     CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author .............................................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
               Transcript 3 Exon 3.1  PDB: L:25-70 UniProt: 1-70           Transcript 3
                1i6h L   25 ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR   70
                                    34        44        54        64      

Chain R from PDB  Type:RNA  Length:9
                                          
                1i6h R    1 GACCAGGCA    9

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (12, 13)

Asymmetric/Biological Unit

(-) CATH Domains  (11, 13)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1I6H)

(-) Gene Ontology  (37, 180)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (RPB1_YEAST | P04050)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001055    RNA polymerase II activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0003968    RNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006366    transcription by RNA polymerase II    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0001172    transcription, RNA-templated    The cellular synthesis of RNA on a template of RNA.
    GO:0019985    translesion synthesis    The replication of damaged DNA by synthesis across a lesion in the template strand; a specialized DNA polymerase or replication complex inserts a defined nucleotide across from the lesion which allows DNA synthesis to continue beyond the lesion. This process can be mutagenic depending on the damaged nucleotide and the inserted nucleotide.
cellular component
    GO:0005665    RNA polymerase II, core complex    RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B   (RPB2_YEAST | P08518)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001055    RNA polymerase II activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0003968    RNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0032549    ribonucleoside binding    Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006366    transcription by RNA polymerase II    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0001172    transcription, RNA-templated    The cellular synthesis of RNA on a template of RNA.
cellular component
    GO:0005665    RNA polymerase II, core complex    RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain C   (RPB3_YEAST | P16370)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001055    RNA polymerase II activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0003968    RNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046983    protein dimerization activity    The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
biological process
    GO:0006369    termination of RNA polymerase II transcription    The process in which the synthesis of an RNA molecule by RNA polymerase II using a DNA template is completed.
    GO:0006366    transcription by RNA polymerase II    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0001172    transcription, RNA-templated    The cellular synthesis of RNA on a template of RNA.
cellular component
    GO:0005665    RNA polymerase II, core complex    RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain E   (RPAB1_YEAST | P20434)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001054    RNA polymerase I activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001055    RNA polymerase II activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001056    RNA polymerase III activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase III specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0003968    RNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0042254    ribosome biogenesis    A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
    GO:0042797    tRNA transcription by RNA polymerase III    The synthesis of transfer RNA (tRNA) from a DNA template by RNA polymerase III (Pol III), originating at a Pol III promoter.
    GO:0006386    termination of RNA polymerase III transcription    The process in which transcription by RNA polymerase III is terminated; Pol III has an intrinsic ability to terminate transcription upon incorporation of 4 to 6 contiguous U residues.
    GO:0006360    transcription by RNA polymerase I    The synthesis of RNA from a DNA template by RNA polymerase I (RNAP I), originating at an RNAP I promoter.
    GO:0006366    transcription by RNA polymerase II    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006383    transcription by RNA polymerase III    The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter.
    GO:0006385    transcription elongation from RNA polymerase III promoter    The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase III promoter by the addition of ribonucleotides catalyzed by RNA polymerase III.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0001172    transcription, RNA-templated    The cellular synthesis of RNA on a template of RNA.
cellular component
    GO:0005736    RNA polymerase I complex    RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005665    RNA polymerase II, core complex    RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005666    RNA polymerase III complex    RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain F   (RPAB2_YEAST | P20435)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001054    RNA polymerase I activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001055    RNA polymerase II activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001056    RNA polymerase III activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase III specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0003968    RNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0042254    ribosome biogenesis    A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
    GO:0042797    tRNA transcription by RNA polymerase III    The synthesis of transfer RNA (tRNA) from a DNA template by RNA polymerase III (Pol III), originating at a Pol III promoter.
    GO:0006386    termination of RNA polymerase III transcription    The process in which transcription by RNA polymerase III is terminated; Pol III has an intrinsic ability to terminate transcription upon incorporation of 4 to 6 contiguous U residues.
    GO:0006360    transcription by RNA polymerase I    The synthesis of RNA from a DNA template by RNA polymerase I (RNAP I), originating at an RNAP I promoter.
    GO:0006366    transcription by RNA polymerase II    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006383    transcription by RNA polymerase III    The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter.
    GO:0006385    transcription elongation from RNA polymerase III promoter    The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase III promoter by the addition of ribonucleotides catalyzed by RNA polymerase III.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0001172    transcription, RNA-templated    The cellular synthesis of RNA on a template of RNA.
cellular component
    GO:0005736    RNA polymerase I complex    RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005665    RNA polymerase II, core complex    RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005666    RNA polymerase III complex    RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain H   (RPAB3_YEAST | P20436)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001054    RNA polymerase I activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001055    RNA polymerase II activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001056    RNA polymerase III activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase III specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0003968    RNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0042254    ribosome biogenesis    A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
    GO:0042797    tRNA transcription by RNA polymerase III    The synthesis of transfer RNA (tRNA) from a DNA template by RNA polymerase III (Pol III), originating at a Pol III promoter.
    GO:0006386    termination of RNA polymerase III transcription    The process in which transcription by RNA polymerase III is terminated; Pol III has an intrinsic ability to terminate transcription upon incorporation of 4 to 6 contiguous U residues.
    GO:0006360    transcription by RNA polymerase I    The synthesis of RNA from a DNA template by RNA polymerase I (RNAP I), originating at an RNAP I promoter.
    GO:0006366    transcription by RNA polymerase II    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006383    transcription by RNA polymerase III    The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter.
    GO:0006385    transcription elongation from RNA polymerase III promoter    The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase III promoter by the addition of ribonucleotides catalyzed by RNA polymerase III.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0001172    transcription, RNA-templated    The cellular synthesis of RNA on a template of RNA.
cellular component
    GO:0005736    RNA polymerase I complex    RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005665    RNA polymerase II, core complex    RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005666    RNA polymerase III complex    RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain I   (RPB9_YEAST | P27999)
molecular function
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0003968    RNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006281    DNA repair    The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0001193    maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter    Suppression of the occurrence of transcriptional errors, such as substitutions and/or insertions of nucleotides that do not correctly match the template base, during the process of transcription elongation from an RNA polymerase II promoter.
    GO:0006366    transcription by RNA polymerase II    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006367    transcription initiation from RNA polymerase II promoter    Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0001172    transcription, RNA-templated    The cellular synthesis of RNA on a template of RNA.
    GO:0006283    transcription-coupled nucleotide-excision repair    The nucleotide-excision repair process that carries out preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the global genome nucleotide excision repair pathway.
cellular component
    GO:0005665    RNA polymerase II, core complex    RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain J   (RPAB5_YEAST | P22139)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001054    RNA polymerase I activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001055    RNA polymerase II activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001056    RNA polymerase III activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase III specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0003968    RNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0042254    ribosome biogenesis    A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
    GO:0042797    tRNA transcription by RNA polymerase III    The synthesis of transfer RNA (tRNA) from a DNA template by RNA polymerase III (Pol III), originating at a Pol III promoter.
    GO:0006386    termination of RNA polymerase III transcription    The process in which transcription by RNA polymerase III is terminated; Pol III has an intrinsic ability to terminate transcription upon incorporation of 4 to 6 contiguous U residues.
    GO:0006360    transcription by RNA polymerase I    The synthesis of RNA from a DNA template by RNA polymerase I (RNAP I), originating at an RNAP I promoter.
    GO:0006366    transcription by RNA polymerase II    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006383    transcription by RNA polymerase III    The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter.
    GO:0006385    transcription elongation from RNA polymerase III promoter    The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase III promoter by the addition of ribonucleotides catalyzed by RNA polymerase III.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0001172    transcription, RNA-templated    The cellular synthesis of RNA on a template of RNA.
cellular component
    GO:0005736    RNA polymerase I complex    RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005665    RNA polymerase II, core complex    RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005666    RNA polymerase III complex    RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain K   (RPB11_YEAST | P38902)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001055    RNA polymerase II activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0003968    RNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046983    protein dimerization activity    The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
biological process
    GO:0006369    termination of RNA polymerase II transcription    The process in which the synthesis of an RNA molecule by RNA polymerase II using a DNA template is completed.
    GO:0006366    transcription by RNA polymerase II    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0001172    transcription, RNA-templated    The cellular synthesis of RNA on a template of RNA.
cellular component
    GO:0005665    RNA polymerase II, core complex    RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain L   (RPAB4_YEAST | P40422)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001054    RNA polymerase I activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001055    RNA polymerase II activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0001056    RNA polymerase III activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase III specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0003968    RNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0042254    ribosome biogenesis    A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
    GO:0042797    tRNA transcription by RNA polymerase III    The synthesis of transfer RNA (tRNA) from a DNA template by RNA polymerase III (Pol III), originating at a Pol III promoter.
    GO:0006386    termination of RNA polymerase III transcription    The process in which transcription by RNA polymerase III is terminated; Pol III has an intrinsic ability to terminate transcription upon incorporation of 4 to 6 contiguous U residues.
    GO:0006360    transcription by RNA polymerase I    The synthesis of RNA from a DNA template by RNA polymerase I (RNAP I), originating at an RNAP I promoter.
    GO:0006366    transcription by RNA polymerase II    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006383    transcription by RNA polymerase III    The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter.
    GO:0006385    transcription elongation from RNA polymerase III promoter    The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase III promoter by the addition of ribonucleotides catalyzed by RNA polymerase III.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0001172    transcription, RNA-templated    The cellular synthesis of RNA on a template of RNA.
cellular component
    GO:0005736    RNA polymerase I complex    RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005665    RNA polymerase II, core complex    RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005666    RNA polymerase III complex    RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RPAB1_YEAST | P204341dzf 1i3q 1i50 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4c2m 4c3h 4c3i 4c3j 4v1m 4v1n 4v1o 4x67 4x6a 4y52 4y7n 4ym7 5c3e 5c44 5c4a 5c4j 5c4x 5fj8 5fj9 5fja 5fmf 5fyw 5fz5 5g5l 5ip7 5ip9 5lmx 5m3f 5m3m 5m5w 5m5x 5m5y 5m64 5n5y 5n5z 5n60 5n61 5sva 5u5q
        RPAB2_YEAST | P204351i3q 1i50 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4c2m 4c3h 4c3i 4c3j 4v1m 4v1n 4v1o 4x67 4x6a 4y52 4y7n 4ym7 5c3e 5c44 5c4a 5c4j 5c4x 5fj8 5fj9 5fja 5fmf 5fyw 5fz5 5g5l 5ip7 5ip9 5lmx 5m3f 5m3m 5m5w 5m5x 5m5y 5m64 5n5y 5n5z 5n60 5n61 5sva 5u5q
        RPAB3_YEAST | P204361a1d 1i3q 1i50 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4c2m 4c3h 4c3i 4c3j 4v1m 4v1n 4v1o 4x67 4x6a 4y52 4y7n 4ym7 5c3e 5c44 5c4a 5c4j 5c4x 5fj8 5fj9 5fja 5fmf 5fyw 5fz5 5g5l 5ip7 5ip9 5lmx 5m3f 5m3m 5m5w 5m5x 5m5y 5m64 5n5y 5n5z 5n60 5n61 5sva 5u5q
        RPAB4_YEAST | P404221i3q 1i50 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4c2m 4c3h 4c3i 4c3j 4v1m 4v1n 4v1o 4x67 4x6a 4y52 4y7n 4ym7 5c3e 5c44 5c4a 5c4j 5c4x 5fj8 5fj9 5fja 5fmf 5fyw 5fz5 5g5l 5ip7 5ip9 5lmx 5m3f 5m3m 5m5w 5m5x 5m5y 5m64 5n5y 5n5z 5n60 5n61 5sva 5u5q
        RPAB5_YEAST | P221391i3q 1i50 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4c2m 4c3h 4c3i 4c3j 4v1m 4v1n 4v1o 4x67 4x6a 4y52 4y7n 4ym7 5c3e 5c44 5c4a 5c4j 5c4x 5fj8 5fj9 5fja 5fmf 5fyw 5fz5 5g5l 5ip7 5ip9 5lmx 5m3f 5m3m 5m5w 5m5x 5m5y 5m64 5n5y 5n5z 5n60 5n61 5sva 5u5q
        RPB11_YEAST | P389021i3q 1i50 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4v1m 4v1n 4v1o 4x67 4x6a 4y52 4y7n 5c3e 5c44 5c4a 5c4j 5c4x 5fmf 5fyw 5fz5 5ip7 5ip9 5sva 5u5q
        RPB1_YEAST | P040501i3q 1i50 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2l0i 2lo6 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4gwq 4v1m 4v1n 4v1o 4x67 4x6a 4y52 4y7n 5c3e 5c44 5c4a 5c4j 5c4x 5fmf 5fyw 5fz5 5ip7 5ip9 5sva 5u5q
        RPB2_YEAST | P085181i3q 1i50 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4v1m 4v1n 4v1o 4x67 4x6a 4y52 4y7n 5c3e 5c44 5c4a 5c4j 5c4x 5fmf 5fyw 5fz5 5ip7 5ip9 5sva 5u5q
        RPB3_YEAST | P163701i3q 1i50 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4v1m 4v1n 4v1o 4x67 4x6a 4y52 4y7n 5c3e 5c44 5c4a 5c4j 5c4x 5fmf 5fyw 5fz5 5ip7 5ip9 5sva 5u5q
        RPB9_YEAST | P279991i3q 1i50 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4v1m 4v1n 4v1o 4x67 4x6a 4y52 4y7n 5c3e 5c44 5c4a 5c4j 5c4x 5fmf 5fyw 5fz5 5ip7 5ip9 5sva 5u5q

(-) Related Entries Specified in the PDB File

1i3q FREE RNA POLYMERASE II, FORM I
1i50 FREE RNA POLYMERASE II, FORM II