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(-) Description

Title :  VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION: V. STRUCTURE OF TWO AMINOACRIDINE-DINUCLEOSIDE MONOPHOSPHATE CRYSTALLINE COMPLEXES, PROFLAVINE-5-IODOCYTIDYLYL (3'-5') GUANOSINE AND ACRIDINE ORANGE-5-IODOCYTIDYLYL (3'-5') GUANOSINE
 
Authors :  B. S. Reddy, T. P. Seshadri, T. D. Sakore, H. M. Sobell
Date :  18 Aug 88  (Deposition) - 18 Aug 88  (Release) - 21 Sep 01  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym./Biol. Unit :  A,B,_#
#:   chains that contain no standard or modified protein/DNA/RNA residue)
 
Keywords :  Right Handed Rna, Double Helix, Complexed With Drug, Modified (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  B. S. Reddy, T. P. Seshadri, T. D. Sakore, H. M. Sobell
Visualization Of Drug-Nucleic Acid Interactions At Atomic Resolution: V. Structure Of Two Aminoacridine-Dinucleoside Monophosphate Crystalline Complexes, Proflavine-5-Iodocytidylyl (3'-5') Guanosine And Acridine Orange-5-Iodocytidylyl (3'-5') Guanosine
J. Mol. Biol. V. 135 787 1979
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RNA (5'-R(*(I)CP*G)-3')
    ChainsA, B
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit AB_#
#:   chains that contain no standard or modified protein/DNA/RNA residue)
 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1+C2Mod. Residue
2IDO2Ligand/IonIODO GROUP
3MOH1Ligand/IonMETHANOL
4PF2Ligand/IonPROFLAVINE

(-) Sites  (0, 0)

(no "Site" information available for DRBB16)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for DRBB16)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for DRBB16)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for DRBB16)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for DRBB16)

(-) Exons   (0, 0)

(no "Exon" information available for DRBB16)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:2
                                
                 drbb16 A 1 cG 2
                            | 
                            | 
                            1-+C

Chain B from PDB  Type:RNA  Length:2
                                
                 drbb16 B 3 cG 4
                            | 
                            | 
                            3-+C

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for DRBB16)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for DRBB16)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for DRBB16)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for DRBB16)

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 Related Entries

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