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(-) Description

Title :  THE STRUCTURE OF A PSEUDO INTERCALATED COMPLEX BETWEEN ACTINOMYCIN AND THE DNA BINDING SEQUENCE D(GPC)
 
Authors :  F. Takusagawa, M. Dabrow, S. Neidle, H. M. Berman
Date :  18 Aug 88  (Deposition) - 18 Aug 88  (Release) - 21 Sep 01  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B#
Biol. Unit 1:  A,B,C,D  (1x)
#:   chains that contain no standard or modified protein/DNA/RNA residue)
 
Keywords :  U-Dna, Single Strand, Open, Complexed With Drug (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  F. Takusagawa, M. Dabrow, S. Neidle, H. M. Berman
The Structure Of A Pseudo Intercalated Complex Between Actinomycin And The Dna Binding Sequence D(Gpc)
Nature V. 296 466 1982
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*C)-3')
    ChainsA
    EngineeredYES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit AB
Biological Unit 1 (1x)ABCD
#:   chains that contain no standard or modified protein/DNA/RNA residue)
 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 6)

Asymmetric Unit (6, 6)
No.NameCountTypeFull Name
1DPR1Ligand/Ion
2DTH1Ligand/Ion
3DVA1Ligand/Ion
4MVA1Ligand/IonN-METHYLVALINE
5PXZ1Ligand/Ion2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE
6SAR1Ligand/IonSARCOSINE
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1DPR-1Ligand/Ion
2DTH-1Ligand/Ion
3DVA-1Ligand/Ion
4MVA-1Ligand/IonN-METHYLVALINE
5PXZ-1Ligand/Ion2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE
6SAR-1Ligand/IonSARCOSINE

(-) Sites  (0, 0)

(no "Site" information available for DDB011)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for DDB011)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
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Chain A from PDB  Type:DNA  Length:2
                                
                 ddb011 A 1 GC 2

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for DDB011)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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