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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN L-ARGININE:GLYCINE AMIDINOTRANSFERASE IN COMPLEX WITH DELTA-AMINO VALERIC ACID
 
Authors :  E. Fritsche, A. Humm, R. Huber
Date :  12 Oct 98  (Deposition) - 09 Feb 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.37
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Creatine Biosynthesis, Catalytic Triad, Reaction Mechanism, Novel Fold, Fivefold Pseudosymmetry, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. Fritsche, A. Humm, R. Huber
The Ligand-Induced Structural Changes Of Human L-Arginine:Glycine Amidinotransferase. A Mutational And Crystallographic Study.
J. Biol. Chem. V. 274 3026 1999
PubMed-ID: 9915841  |  Reference-DOI: 10.1074/JBC.274.5.3026
(for further references see the PDB file header)

(-) Compounds

Molecule 1
    Cellular LocationCYTOSOLIC
    ChainsA
    EC Number2.1.4.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System GeneAT38H
    Expression System PlasmidPRSETAT38H
    Expression System StrainBL21 (DE3) PLYSS
    Expression System Taxid562
    Expression System VectorPRSET
    FragmentRESIDUES 38 - 423
    GeneAT38H
    OrganKIDNEY
    OrganelleMITOCHONDRIA
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsWITHOUT SIGNAL SEQUENCE (1-37) BUT WURCE 19 N-TERMINAL ATTACHED 6-HISTIDINE- TAG (14 RESIDUES)
    StrainBL(21)DE3PLYSS
    SynonymTRANSAMIDINASE, AT38

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1DAV1Ligand/IonDELTA-AMINO VALERIC ACID
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1DAV2Ligand/IonDELTA-AMINO VALERIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:170 , ASN A:300 , HIS A:303 , ALA A:306 , ARG A:322 , SER A:355 , GLY A:402 , CYS A:407 , HOH A:585BINDING SITE FOR RESIDUE DAV A 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 7JDW)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:286 -Pro A:287

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 7JDW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 7JDW)

(-) Exons   (0, 0)

(no "Exon" information available for 7JDW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:360
                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d7jdwa_ A: L-arginine: glycine amidinotransferase                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 7jdwA00 A:64-423 L-arginine/glycine Amidinotransferase; Chain A                                                                                                                                                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeeeeee............hhhhhh..hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh...eeee........eee....eee......hhhheeee..eeee.....hhh..hhhh.hhhhhhhhh...eeee.......hhh.........hhhhhhhhhh.............hhheeee..eeee.......hhhhhhhhhhh....eeee..............eeeee..eeee........hhhhhh...eee.................hhhhh..eeee..eeeee...hhhhhhhhh...eeeee....hhhh.......eee.eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 7jdw A  64 CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLD 423
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 7JDW)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GATM_HUMAN | P504401jdw 1jdx 2jdw 2jdx 3jdw 4jdw 5jdw 6jdw 8jdw 9jdw

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 7JDW)