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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN CAMKK2B BOUND TO A BENZAMIDE INHIBITOR
 
Authors :  R. M. Counago, C. R. M. Aquith, P. Arruda, A. M. Edwards, O. Gileadi, Stru Genomics Consortium (Sgc)
Date :  15 May 17  (Deposition) - 24 May 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Protein Kinase Domain, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. M. Counago, C. R. M. Aquith, P. Arruda, A. M. Edwards, O. Gileadi, Structural Genomics Consortium (Sgc)
Crystal Structure Of The Human Camkk2B
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE 2
    ChainsA
    EC Number2.7.11.17
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantR3
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 161-449
    GeneCAMKK2, CAMKKB, KIAA0787
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCAMKK 2,CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE BETA,CAMKK BETA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
19JS1Ligand/Ion4-({5-[(3-HYDROXY-4-METHYLPHENYL)AMINO]-4-OXO-4H-1,2,6-THIADIAZIN-3-YL}AMINO)BENZAMIDE
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:171 , VAL A:179 , ALA A:192 , LYS A:194 , LEU A:269 , VAL A:270 , GLN A:272 , SER A:367 , HOH A:604 , HOH A:609 , HOH A:685 , HOH A:705 , HOH A:707binding site for residue 9JS A 501
2AC2SOFTWAREHOH A:602 , HOH A:608 , HOH A:618 , HOH A:631 , HOH A:677 , HOH A:679binding site for residue MG A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5VT1)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Val A:278 -Pro A:279
2Gln A:412 -Pro A:413

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VT1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VT1)

(-) Exons   (0, 0)

(no "Exon" information available for 5VT1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..eeeeeeeee....eeeeeee....eeeeeeeeehhhhhhhh.hhhhhhhhhhhhhh.........eeeeee.....eeeeeee................hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee......ee.....hhhhhhhhhh...eehhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh..........hhhhhhhhhhhh........hhhhhh.hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vt1 A 160 MQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQARGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLHPWVTR 448
                                   169       179       189       199     ||230       240       250       260       270       280       290       300       310       320       330       340       350       360|      373       383       393       403       413       423       433       443     
                                                                       205|                                                                                                                                  360|                                                                                    
                                                                        227                                                                                                                                   364                                                                                    

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VT1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5VT1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5VT1)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KKCC2_HUMAN | Q96RR42zv2 5uy6 5uyj

(-) Related Entries Specified in the PDB File

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