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(-) Description

Title :  STRUCTURE-BASED DESIGN OF ASK1 INHIBITORS AS POTENTIAL FIRST-IN-CLASS AGENTS FOR HEART FAILURE
 
Authors :  D. R. Dougan
Date :  01 Feb 17  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase, Metal-Binding, Apoptosis, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Lanier, J. Pickens, S. V. Bigi, E. L. Bradshaw-Pierce, A. Chambers, Z. S. Cheruvallath, D. Cole, D. R. Dougan, J. Ermolieff, T. Gibson, P. Halkowycz, A. Hirokawa, A. Ivetac, J. Miura, E. Nunez, M. Sabat, J. Tyhonas, H. Wang, X. Wang, S. Swann
Structure-Based Design Of Ask1 Inhibitors As Potential Agents For Heart Failure.
Acs Med Chem Lett V. 8 316 2017
PubMed-ID: 28337323  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.6B00481

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5
    ChainsA, B
    EC Number2.7.11.25
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPEH8
    Expression System StrainROSETTA 2(DE3) PLYSS
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 670-940
    GeneMAP3K5, ASK1, MAPKKK5, MEKK5
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymAPOPTOSIS SIGNAL-REGULATING KINASE 1,ASK-1,MAPK/ERK KINASE KINASE 5,MEKK 5

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
18GY2Ligand/Ion2-(6-{4-[(2R)-1-HYDROXYPROPAN-2-YL]-4H-1,2,4-TRIAZOL-3-YL}PYRIDIN-2-YL)-6-[(PROPAN-2-YL)OXY]-2,3-DIHYDRO-1H-ISOINDOL-1-ONE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
18GY1Ligand/Ion2-(6-{4-[(2R)-1-HYDROXYPROPAN-2-YL]-4H-1,2,4-TRIAZOL-3-YL}PYRIDIN-2-YL)-6-[(PROPAN-2-YL)OXY]-2,3-DIHYDRO-1H-ISOINDOL-1-ONE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
18GY1Ligand/Ion2-(6-{4-[(2R)-1-HYDROXYPROPAN-2-YL]-4H-1,2,4-TRIAZOL-3-YL}PYRIDIN-2-YL)-6-[(PROPAN-2-YL)OXY]-2,3-DIHYDRO-1H-ISOINDOL-1-ONE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:686 , LYS A:688 , GLY A:689 , ALA A:707 , LYS A:709 , VAL A:738 , MET A:754 , GLU A:755 , GLN A:756 , VAL A:757 , GLY A:759 , GLY A:760 , ASP A:807 , ASN A:808 , LEU A:810 , SER A:821 , ASP A:822 , HOH A:1124binding site for residue 8GY A 1000
2AC2SOFTWARELEU B:686 , LYS B:688 , GLY B:689 , ALA B:707 , LYS B:709 , MET B:754 , GLU B:755 , GLN B:756 , VAL B:757 , GLY B:760 , ASP B:807 , ASN B:808 , LEU B:810 , TYR B:814 , SER B:821 , ASP B:822binding site for residue 8GY B 1000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UOX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5UOX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UOX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UOX)

(-) Exons   (0, 0)

(no "Exon" information available for 5UOX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.........eeee....eeeeeee.....eeeeeeee.....hhhhhhhhhhhhh.........eeeeeee..eeeeeee.....hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee......eee......ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uox A 670 LLEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLTFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLKV 940
                                   679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829|      847       857       867       877       887       897       907       917       927       937   
                                                                                                                                                                                         829|                                                                                                      
                                                                                                                                                                                          838                                                                                                      

Chain B from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee.........eeeee..eeeeeeee.....eeeeeeee...hhhhhhhhhhh.........eeeeeee..eeeeeee.....hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh..ee....hhh.eee......eee......ee.....hhhhh......hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh........hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5uox B 670 LLEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLTFTGTLQYMAPEIIYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLK 939
                                   679       689       699       709    || 723       733       743       753       763       773       783       793       803       813       823     ||841       851|      867       877       887       897       907       917       927       937  
                                                                      714|                                                                                                           829|          851|                                                                                 
                                                                       719                                                                                                            838           858                                                                                 

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UOX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UOX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UOX)

(-) Gene Ontology  (46, 46)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        M3K5_HUMAN | Q996832clq 3vw6 4bf2 4bhn 4bib 4bic 4bid 4bie 5ulm 5uor 5up3 5v19 5v24

(-) Related Entries Specified in the PDB File

5uor 5up3