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(-) Description

Title :  STRUCTURE-BASED DESIGN OF ASK1 INHIBITORS AS POTENTIAL FIRST-IN-CLASS AGENTS FOR HEART FAILURE
 
Authors :  D. R. Dougan
Date :  01 Feb 17  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase, Metal-Binding, Apoptosis, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Lanier, J. Pickens, S. V. Bigi, E. L. Bradshaw-Pierce, A. Chambers, Z. S. Cheruvallath, D. Cole, D. R. Dougan, J. Ermolieff, T. Gibson, P. Halkowycz, A. Hirokawa, A. Ivetac, J. Miura, E. Nunez, M. Sabat, J. Tyhonas, H. Wang, X. Wang, S. Swann
Structure-Based Design Of Ask1 Inhibitors As Potential Agents For Heart Failure.
Acs Med Chem Lett V. 8 316 2017
PubMed-ID: 28337323  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.6B00481

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5
    ChainsA, B
    EC Number2.7.11.25
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPEH8
    Expression System StrainROSETTA 2(DE3) PLYSS
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 670-939
    GeneMAP3K5, ASK1, MAPKKK5, MEKK5
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymAPOPTOSIS SIGNAL-REGULATING KINASE 1,ASK-1,MAPK/ERK KINASE KINASE 5,MEKK 5

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
18GV2Ligand/Ion6-{[(2S)-4-METHYLMORPHOLIN-2-YL]METHOXY}-2-{6-[4-(PROPAN-2-YL)-4H-1,2,4-TRIAZOL-3-YL]PYRIDIN-2-YL}-2,3-DIHYDRO-1H-ISOINDOL-1-ONE
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
18GV1Ligand/Ion6-{[(2S)-4-METHYLMORPHOLIN-2-YL]METHOXY}-2-{6-[4-(PROPAN-2-YL)-4H-1,2,4-TRIAZOL-3-YL]PYRIDIN-2-YL}-2,3-DIHYDRO-1H-ISOINDOL-1-ONE
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
18GV1Ligand/Ion6-{[(2S)-4-METHYLMORPHOLIN-2-YL]METHOXY}-2-{6-[4-(PROPAN-2-YL)-4H-1,2,4-TRIAZOL-3-YL]PYRIDIN-2-YL}-2,3-DIHYDRO-1H-ISOINDOL-1-ONE
2SO41Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:705 , 8GV A:1002binding site for residue SO4 A 1001
2AC2SOFTWARELEU A:686 , LYS A:688 , ALA A:707 , LYS A:709 , VAL A:738 , MET A:754 , GLU A:755 , GLN A:756 , VAL A:757 , GLY A:759 , GLY A:760 , ASP A:807 , LEU A:810 , TYR A:814 , SER A:821 , ASP A:822 , SO4 A:1001binding site for residue 8GV A 1002
3AC3SOFTWAREHIS B:731 , LEU B:732 , ASN B:797binding site for residue SO4 B 1001
4AC4SOFTWARELEU B:686 , VAL B:694 , ALA B:707 , LYS B:709 , VAL B:738 , MET B:754 , GLU B:755 , GLN B:756 , VAL B:757 , GLY B:759 , ASP B:807 , LEU B:810 , TYR B:814 , SER B:821 , ASP B:822 , HOH B:1113binding site for residue 8GV B 1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UOR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5UOR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UOR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UOR)

(-) Exons   (0, 0)

(no "Exon" information available for 5UOR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.........eeee....eeeeeee.....eeeeeeee..hhhhhhhhhhhhhhhh.........eeeeeee..eeeeeee.....hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh..ee........eee......eee......ee....hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.......hhhhhhhh.........hhhhhhhhhhh.........hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uor A 671 LEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLFTGTLQYMAPEIIDYGKAADIWSLGCTIIEMATGKPPFYEAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLK 939
                                   680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       839       849  ||   864       874       890       900       910       920       930         
                                                                                                                                                                                        829|          852|                      883|                                                 
                                                                                                                                                                                         839           858                       890                                                 

Chain B from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.........eeee....eeeeeee.....eeeeeeee.....hhhhhhhhhhhhh.........eeeeeee..eeeeeee.....hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.ee........eee......eee.hhhhhee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh........hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uor B 670 LLEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLTFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLK 939
                                   679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829|      847       857       867       877       887       897       907       917       927       937  
                                                                                                                                                                                         829|                                                                                                     
                                                                                                                                                                                          838                                                                                                     

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UOR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UOR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UOR)

(-) Gene Ontology  (46, 46)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        M3K5_HUMAN | Q996832clq 3vw6 4bf2 4bhn 4bib 4bic 4bid 4bie 5ulm 5uox 5up3 5v19 5v24

(-) Related Entries Specified in the PDB File

5uox 5up3