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(-) Description

Title :  CRYSTAL STRUCTURE OF HIP1 (RV2224C)
 
Authors :  J. L. Naffin-Olivos, A. Daab, A. White, N. Goldfarb, A. C. Milne, D. Liu, J. Rengarajan, G. A. Petsko, D. Ringe
Date :  09 Jan 17  (Deposition) - 12 Apr 17  (Release) - 10 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.61
Chains :  Asym./Biol. Unit :  A
Keywords :  Serine Protease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Naffin-Olivos, A. Daab, A. White, N. E. Goldfarb, A. C. Milne, D. Liu, J. Baikovitz, B. M. Dunn, J. Rengarajan, G. A. Petsko, D. Ringe
Structure Determination Of Mycobacterium Tuberculosis Serin Protease Hip1 (Rv2224C).
Biochemistry V. 56 2304 2017
PubMed-ID: 28346784  |  Reference-DOI: 10.1021/ACS.BIOCHEM.6B01066

(-) Compounds

Molecule 1 - CARBOXYLESTERASE A
    Atcc: 25618
    Chains: A
    EC Number: 3.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)STAR
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 50-520
    Gene: CAEA, RV2224C, MTCY427.05C
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Other Details: N-TERMINAL 6XHIS TAG WITH LINKER AND THROMBIN RECOGNITION CLEAVAGE SITE.
    Strain: ATCC 25618 / H37RV

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5UGQ)

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1A:55 -A:70
2A:153 -A:189
3A:282 -A:288
4A:393 -A:433
5A:499 -A:520

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:110 -Pro A:111
2Arg A:148 -Pro A:149

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UGQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UGQ)

(-) Exons   (0, 0)

(no "Exon" information available for 5UGQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:463
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee......eeeeeeee.........eeeeeeeee.......eeeeee......hhhhhhhhhhhhhhhhhhhheeeeee...............hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..........hhhhhh...................eeeee......hhhhhhhhhhhhh.eeeee...........hhhhhhhhhhhhhhh.......ee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ugq A  50 VEWTPCRPGGALCGKLAVPVDYDRPDGDVAALALIRFPATGDKIGSLVINPGGPGESGIEAALGVFQTLPKRVHERFDLVGFDPRGVASSRPAIWCNSDADNDRLRAEPQVDYSREGVAHIENETKQFVGRCVDKmGKNFLAHVGTVNVAKDLDAIRAALGDDKLTYLGYSYGTRIGSAYAEEFPQRVRAmILDGAVDPNADPIEAELRQAKGFQDAFNNYAADCAKNAGCPLGADPAKAVEVYHSLVDPLVDPDNPRISRPARTKDPRGLSYSDAIVGTImALYSPNLWQHLTDGLSELVDNRGDTLLALADmYmRRDSHGRYNNSGDARVAINCVDQPPVTDRDKVIDEDRRAREIAPFmSYGKFTGDAPLGTCAFWPVPPTSQPHAVSAPGLVPTVVVSTTHDPATPYKAGVDLANQLRGSLLTFDGTQHTVVFQGDSCIDEYVTAYLIGGTTPPSGAKC 520
                                  ||67        77        87        97       107       117       127       137       147       157       167       177       187     | 197       207       217       227       237       247|      257       267       277       287       297       307       317       327       337 |     347       357       367   | | 377       387       397       407       417 |     427       437       447       457       467       477       487       497       507       517   
                                 56|                                                                                                                             193-MSE                                                248-MSE                                                                                    339-MSE                         371-MSE                                         419-MSE                                                                                                 
                                  65                                                                                                                                                                                                                                                                                                                 373-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UGQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UGQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UGQ)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:148 - Pro A:149   [ RasMol ]  
    Gly A:110 - Pro A:111   [ RasMol ]  
 

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        CAEA_MYCTU | P9WHR3: 5uno 5uoh

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