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(-) Description

Title :  CRYSTAL STRUCTURE OF CO-CAO1 IN COMPLEX WITH PICEATANNOL
 
Authors :  X. Sui, K. Palczewski, S. Banerjee, P. D. Kiser
Date :  15 Dec 16  (Deposition) - 31 May 17  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Carotenoid Cleavage Oxygenase Beta Propeller Dioxygenase Piceatannol, Carotenoid Oxygenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Sui, A. C. Weitz, E. R. Farquhar, M. Badiee, S. Banerjee, J. Von Lintig, G. P. Tochtrop, K. Palczewski, M. P. Hendrich, P. D. Kiser
Structure And Spectroscopy Of Alkene-Cleaving Dioxygenases Containing An Atypically Coordinated Non-Heme Iron Center.
Biochemistry V. 56 2836 2017
PubMed-ID: 28493664  |  Reference-DOI: 10.1021/ACS.BIOCHEM.7B00251

(-) Compounds

Molecule 1 - CAROTENOID OXYGENASE 1
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CAO-1, NCU07008
    Organism Scientific: NEUROSPORA CRASSA (STRAIN ATCC 24698 / 74-OR23- 1A / CBS 708.71 / DSM 1257 / FGSC 987)
    Organism Taxid: 367110
    Strain: ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 17)

Asymmetric Unit (3, 17)
No.NameCountTypeFull Name
1CO4Ligand/IonCOBALT (II) ION
2DMS3Ligand/IonDIMETHYL SULFOXIDE
3PIT10Ligand/IonPICEATANNOL
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2DMS1Ligand/IonDIMETHYL SULFOXIDE
3PIT6Ligand/IonPICEATANNOL
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2DMS2Ligand/IonDIMETHYL SULFOXIDE
3PIT4Ligand/IonPICEATANNOL

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:197 , HIS A:248 , HIS A:313 , HIS A:510 , HOH A:978binding site for residue CO A 601
02AC2SOFTWAREPHE A:91 , TYR A:133 , ASN A:150 , THR A:151 , LYS A:164 , GLU A:165 , HIS A:248 , GLY A:312 , HIS A:313 , PHE A:337 , GLU A:383 , PHE A:384 , PRO A:425 , LEU A:509 , PIT A:603 , HOH A:802 , HOH A:883 , HOH A:978binding site for residue PIT A 602
03AC3SOFTWAREVAL A:336 , PHE A:337 , PHE A:338 , TRP A:339 , MET A:417 , GLY A:423 , ALA A:424 , PRO A:425 , PIT A:602 , HOH A:802binding site for residue PIT A 603
04AC4SOFTWAREARG A:115 , GLU A:117 , ARG A:121 , TYR A:170 , HOH A:701 , HOH A:799 , HOH A:961binding site for residue PIT A 604
05AC5SOFTWAREHIS B:197 , HIS B:248 , HIS B:313 , HIS B:510 , HOH B:853binding site for residue CO B 601
06AC6SOFTWAREPHE B:91 , TYR B:133 , ASN B:150 , THR B:151 , LYS B:164 , GLU B:165 , HIS B:248 , GLY B:312 , HIS B:313 , PHE B:337 , GLU B:383 , PHE B:384 , PRO B:425 , LEU B:509 , HOH B:839 , HOH B:852 , HOH B:853binding site for residue PIT B 602
07AC7SOFTWARETYR B:155 , ASP B:515 , ASP B:518 , HOH B:866 , HOH B:910binding site for residue DMS B 603
08AC8SOFTWAREARG B:115 , GLU B:117 , ARG B:121 , GLU B:124 , TYR B:170 , VAL B:182 , HOH B:701 , HOH B:726 , HOH B:886binding site for residue PIT B 604
09AC9SOFTWAREHIS C:197 , HIS C:248 , HIS C:313 , HIS C:510 , HOH C:952binding site for residue CO C 601
10AD1SOFTWAREPHE C:91 , TYR C:133 , ASN C:150 , THR C:151 , LYS C:164 , GLU C:165 , HIS C:248 , GLY C:312 , HIS C:313 , PHE C:337 , GLU C:383 , PHE C:384 , PRO C:425 , LEU C:509 , HOH C:718 , HOH C:906 , HOH C:952binding site for residue PIT C 602
11AD2SOFTWARETYR C:155 , ASP C:515 , ASP C:518 , VAL C:519binding site for residue DMS C 603
12AD3SOFTWAREARG C:115 , GLU C:117 , ARG C:121 , GLU C:124 , TYR C:170 , HOH C:710 , HOH C:722 , HOH C:937 , HOH C:964binding site for residue PIT C 604
13AD4SOFTWAREHIS D:197 , HIS D:248 , HIS D:313 , HIS D:510 , HOH D:917binding site for residue CO D 601
14AD5SOFTWAREPHE D:91 , TYR D:133 , ASN D:150 , THR D:151 , LYS D:164 , GLU D:165 , HIS D:248 , GLY D:312 , HIS D:313 , PHE D:337 , GLU D:383 , PHE D:384 , PRO D:425 , LEU D:509 , PIT D:603 , HOH D:750 , HOH D:917 , HOH D:1011binding site for residue PIT D 602
15AD6SOFTWAREASN D:41 , VAL D:336 , PHE D:338 , TRP D:339 , GLY D:423 , ALA D:424 , PRO D:425 , PIT D:602binding site for residue PIT D 603
16AD7SOFTWARETYR D:155 , LYS D:516 , ASP D:518 , GLY D:521binding site for residue DMS D 604
17AD8SOFTWAREARG D:115 , GLU D:117 , ARG D:121 , GLU D:124 , TYR D:170 , HOH D:720 , HOH D:748 , HOH D:1049binding site for residue PIT D 605

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5U97)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5U97)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5U97)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5U97)

(-) Exons   (0, 0)

(no "Exon" information available for 5U97)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:497
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhh....eeee...eeee.......eeeeeeee...........hhhhh.eeeeeeeee..eeeeeeee..hhhhhhhhhhh........hhhhh............eeeee..eeeee......eee......eeee................ee......eeeee.........eeeeeee.....eeeeeeee....ee....ee...eeeee.eeee.hhhhhhh.....ee.....eeeeeee....hhhhheeeee...eeeeeeeeee.....eeeeeeee......................eeeeeeee............ee....eeeeee.hhhhh.....eeeeeee.......hhhhhhhhhh.......eeeeee.....eeee.....eee...eeee.........eeeeeeeee....eeeeeeee......eeeeee..........eeeee........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5u97 A  30 LPPAPRYFQGENTAGFMRPVRFEGDITNLEVVGEIPKSIEGTFYRVMPEPHLPSFIPNDPWFNGDGNISGFYFKDGHVDLKQRYVRTEKFVREAEARRSLLGKYRNRYTDLVEFKIRSTANTNIVYWRGQLLALKEDSPPYAMDPETLETFGVYDFDGQLPSLTFTAHPKFDPVTREMVCFGYEAKGDGTRDICYYSFGPDGKIAETVWLVSPVCGMIHDFAVTENFVIFPIIPLVCDVERMKQGGDHWQWDYSIPMYIGVLPRRGAQGSDVKWFEAPHGFAGHVANAFEDDKGHIQLQMAYAKDNVFFWWPDANGKGPRPGEVEAHFANFVLDYQSDKLPLAEPTYLVDDDMEFPRIDDRVATRKHKHTFFCIFDRKPGVTDFEFVMPRAGGGAPMSNGLAHLNHETGDIQRYLPGPRKLTGECIFIPRNSEAAEGDGYVMVLLANYEDMCSELAVLDTKDLTNEVALIKLPVRLRPGLHGNWVDKSDVDGHPAPL 526
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       


Chain B from PDB  Type:PROTEIN  Length:497
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhh....eeee...eeee.......eeeeeeee...........hhhhh.eeeeeeeee..eeeeeeee..hhhhhhhhhhh........hhhhh............eeeee..eeeee......eee......eeee................ee......eeeeee........eeeeeee.....eeeeeeee....ee....ee...eeeee.eeee.hhhhhhh.....ee.....eeeeeee....hhhhheeeee...eeeeeeeeee.....eeeeeeee......................eeeeeeee............ee.....eeeeee.hhhh.....eeeeee........hhhhhhhhhh.......eeeeee.....eeee.....eee...eeee.........eeeeeeeee....eeeeeeee..eeeeeeeeee..........eeeee........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5u97 B  30 LPPAPRYFQGENTAGFMRPVRFEGDITNLEVVGEIPKSIEGTFYRVMPEPHLPSFIPNDPWFNGDGNISGFYFKDGHVDLKQRYVRTEKFVREAEARRSLLGKYRNRYTDLVEFKIRSTANTNIVYWRGQLLALKEDSPPYAMDPETLETFGVYDFDGQLPSLTFTAHPKFDPVTREMVCFGYEAKGDGTRDICYYSFGPDGKIAETVWLVSPVCGMIHDFAVTENFVIFPIIPLVCDVERMKQGGDHWQWDYSIPMYIGVLPRRGAQGSDVKWFEAPHGFAGHVANAFEDDKGHIQLQMAYAKDNVFFWWPDANGKGPRPGEVEAHFANFVLDYQSDKLPLAEPTYLVDDDMEFPRIDDRVATRKHKHTFFCIFDRKPGVTDFEFVMPRAGGGAPMSNGLAHLNHETGDIQRYLPGPRKLTGECIFIPRNSEAAEGDGYVMVLLANYEDMCSELAVLDTKDLTNEVALIKLPVRLRPGLHGNWVDKSDVDGHPAPL 526
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       


Chain C from PDB  Type:PROTEIN  Length:499
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhh....eeee...eeee.......eeeeeeee...........hhhhh.eeeeeeeee..eeeeeeee..hhhhhhhhhhh........hhhhh............eeeee..eeeee......eee......eeee................ee......eeeee.........eeeeeee.....eeeeeeee....ee....ee...eeeee.eeee.hhhhhhh.....ee.....eeeeeee....hhhhheeeee...eeeeeeeeee.....eeeeeeee......................eeeeeeee............ee.....eeeeee.hhhh.....eeeeee........hhhhhhhhhh.......eeeeee.....eeee.....eee...eeee.........eeeeeeeee....eeeeeeee..eeeeeeeeee..........eeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5u97 C  28 EELPPAPRYFQGENTAGFMRPVRFEGDITNLEVVGEIPKSIEGTFYRVMPEPHLPSFIPNDPWFNGDGNISGFYFKDGHVDLKQRYVRTEKFVREAEARRSLLGKYRNRYTDLVEFKIRSTANTNIVYWRGQLLALKEDSPPYAMDPETLETFGVYDFDGQLPSLTFTAHPKFDPVTREMVCFGYEAKGDGTRDICYYSFGPDGKIAETVWLVSPVCGMIHDFAVTENFVIFPIIPLVCDVERMKQGGDHWQWDYSIPMYIGVLPRRGAQGSDVKWFEAPHGFAGHVANAFEDDKGHIQLQMAYAKDNVFFWWPDANGKGPRPGEVEAHFANFVLDYQSDKLPLAEPTYLVDDDMEFPRIDDRVATRKHKHTFFCIFDRKPGVTDFEFVMPRAGGGAPMSNGLAHLNHETGDIQRYLPGPRKLTGECIFIPRNSEAAEGDGYVMVLLANYEDMCSELAVLDTKDLTNEVALIKLPVRLRPGLHGNWVDKSDVDGHPAPL 526
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517         


Chain D from PDB  Type:PROTEIN  Length:497
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhh....eeee...eeee.......eeeeeeee...........hhhhh.eeeeeeeee..eeeeeeee..hhhhhhhhhhh........hhhhh............eeeee..eeeee......eee......eeee................ee......eeeeee........eeeeeee.....eeeeeeee....ee....ee...eeeee.eeee.hhhhhhh.....ee.....eeeeeee....hhhhheeeee...eeeeeeeeee.....eeeeeeee......................eeeeeeee............ee.....eeeee.hhhhh.....eeeeee........hhhhhhhhhh.......eeeeee.....eeee.....eee...eeee.........eeeeeeeee....eeeeeeee..eeeeeeeeee..........eeeee........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5u97 D  30 LPPAPRYFQGENTAGFMRPVRFEGDITNLEVVGEIPKSIEGTFYRVMPEPHLPSFIPNDPWFNGDGNISGFYFKDGHVDLKQRYVRTEKFVREAEARRSLLGKYRNRYTDLVEFKIRSTANTNIVYWRGQLLALKEDSPPYAMDPETLETFGVYDFDGQLPSLTFTAHPKFDPVTREMVCFGYEAKGDGTRDICYYSFGPDGKIAETVWLVSPVCGMIHDFAVTENFVIFPIIPLVCDVERMKQGGDHWQWDYSIPMYIGVLPRRGAQGSDVKWFEAPHGFAGHVANAFEDDKGHIQLQMAYAKDNVFFWWPDANGKGPRPGEVEAHFANFVLDYQSDKLPLAEPTYLVDDDMEFPRIDDRVATRKHKHTFFCIFDRKPGVTDFEFVMPRAGGGAPMSNGLAHLNHETGDIQRYLPGPRKLTGECIFIPRNSEAAEGDGYVMVLLANYEDMCSELAVLDTKDLTNEVALIKLPVRLRPGLHGNWVDKSDVDGHPAPL 526
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5U97)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5U97)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5U97)

(-) Gene Ontology  (2, 2)

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  5u97
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        Q7S860_NEUCR | Q7S860: 5u8x 5u8y 5u8z 5u90

(-) Related Entries Specified in the PDB File

5u8z 5u90