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(-) Description

Title :  CRYSTAL STRUCTURE OF FOOT AND MOUTH DISEASE VIRUS O PANASIA
 
Authors :  A. Kotecha, D. Stuart
Date :  09 Mar 17  (Deposition) - 14 Jun 17  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  1,2,3,4
Biol. Unit 1:  1,2,3,4  (60x)
Keywords :  Foot And Mouth Disease Virus, Fmdv, Virus, Opanasia (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Kotecha, Q. Wang, X. Dong, S. L. Ilca, M. Ondiviela, R. Zihe, J. Seago B. Charleston, E. E. Fry, N. G. A. Abrescia, T. A. Springer, J. T. Huiskonen, D. I. Stuart
Rules Of Engagement Between Alpha V Beta 6 Integrin And Foot-And-Mouth Disease Virus.
Nat Commun V. 8 15408 2017
PubMed-ID: 28534487  |  Reference-DOI: 10.1038/NCOMMS15408

(-) Compounds

Molecule 1 - O PANASIA VP1
    Chains1
    EngineeredYES
    Expression SystemCRICETINAE
    Expression System Cell LineBHK-21
    Expression System Taxid10026
    Organism ScientificFOOT-AND-MOUTH DISEASE VIRUS
    Organism Taxid12110
    StrainO
    VariantPANASIA
 
Molecule 2 - O PANASIA VP2
    Chains2
    EngineeredYES
    Expression SystemCRICETINAE
    Expression System Cell LineBHK-21
    Expression System Taxid10026
    Organism ScientificFOOT-AND-MOUTH DISEASE VIRUS
    Organism Taxid12110
    StrainO
    VariantPANASIA
 
Molecule 3 - POLYPROTEIN
    Chains3
    EngineeredYES
    Expression SystemCRICETINAE
    Expression System Cell LineBHK-21
    Expression System Taxid10026
    MutationYES
    Organism ScientificFOOT-AND-MOUTH DISEASE VIRUS - TYPE O
    Organism Taxid12118
    VariantPANASIA
 
Molecule 4 - O PANASIA VP4
    Chains4
    EngineeredYES
    Expression SystemCRICETINAE
    Expression System Cell LineBHK-21
    Expression System Taxid10026
    Organism ScientificFOOT-AND-MOUTH DISEASE VIRUS
    Organism Taxid12110
    VariantPANASIA

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit 1234
Biological Unit 1 (60x)1234

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5NE4)

(-) Sites  (0, 0)

(no "Site" information available for 5NE4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5NE4)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala 1:110 -Pro 1:111
2Leu 2:83 -Pro 2:84

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5NE4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5NE4)

(-) Exons   (0, 0)

(no "Exon" information available for 5NE4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain 1 from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhh.......hhhhhhhhhhh..eee......ee.hhhhh...hhhhhhhh.eeeeeeeeeeeeeee..eeee....hhhhhhh....ee......eeeee........ee...............eee..eeeeeeeeeeeeeeeee.................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ne4 1   1 TTSAGESADPVTATVENYGGETQVQRRQHTDVSFILDRFVKVTPKDQINVLDLMQTPAHTLVGALLRTATYYFADLEVAVKHEGNLTWVPNGAPETALDNTTNPTAYHKAPLTRLALPYTAPHRVLATAYNGRTLPTSFNYGAIKATRVTELLYRMKRAETYCPRPLLAIHPSEARHKQKIVAP 208
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 ||    164       174       184       194       204    
                                                                                                                                                             132|                                                   
                                                                                                                                                              157                                                   

Chain 2 from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eeeee......ee..........hhhhh...ee.hhhh..eeeeeeee........eeeeee.....hhhhhhhhheeeeeeeeeeeeee......eeeeeeeeee......hhhhhhhhhh.eeee......eeeeee................eeeeeeeeeeee........eeeeeeeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ne4 2  13 RILTTRNGHTTSTTQSSVGVTYGYATTEDFVSGPNTSGLETRVVQAERFFKTHLFDWVTSDSFGRCHLLELPTDHKGVYGSLTDSYAYMRNGWDVEVTAVGNQFNGGCLLVAMVPELCSINKRELYQLTLFPHQFINPRTNMTAHITVPFVGVNRYDQYKVHKPWTLVVMVVAPLTVNTEGAPQIKVYANIAPTNVHVAGEFPSKE 218
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      

Chain 3 from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........................................hhhhhhhhh.ee........eee.......eeeeee....hhhhh.hhhhhhhh.eeeee..eeeeeee......eeeeeeeee........hhhhhh..eeeeee.....eeeeee........ee.............eeeeeeeeee.....eeeeeeee....eeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ne4 3   1 GIFPVACSDGYGGLVTTDPKTADPAYGKVFNPPRNMLPGRFTNFLDVAEACPTFLRFEGDVPYVTTKTDSDRILAQFDLSLAAKHMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMIAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASDTAETTNVQGWVCLFQITHGKADGDALVVLASAGKDFELRLPVDART 219
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210         

Chain 4 from PDB  Type:PROTEIN  Length:46
                                                                              
               SCOP domains ---------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhh........hhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 5ne4 4  15 SGNTGSIINNYYMQQYQNSMDTQLGDDWFSKLASSAFSGLFGALLA  85
                                    24        34    ||  69        79      
                                                   39|                    
                                                    65                    

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5NE4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5NE4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5NE4)

(-) Gene Ontology  (7, 11)

Asymmetric Unit(hide GO term definitions)

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    Ala 1:110 - Pro 1:111   [ RasMol ]  
    Leu 2:83 - Pro 2:84   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        E6Y5R5_9PICO | E6Y5R55ned
        J3T9N5_9PICO | J3T9N55ned 5nem 5ner

(-) Related Entries Specified in the PDB File

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