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(-) Description

Title :  STRUCTURE OF THE MEMBRANE INTEGRAL LIPOPROTEIN N-ACYLTRANSFERASE LNT FROM P. AERUGINOSA
 
Authors :  C. -Y. Huang, C. Boland, N. Howe, M. Wiktor, L. Volgeley, D. Weichert, J. V. Olieric, M. Wang, M. Caffrey
Date :  15 Feb 17  (Deposition) - 12 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Membrane Protein, Lipoprotein, N-Acyltransferase, Lipidic Cubic Phase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Wiktor, D. Weichert, N. Howe, C. Y. Huang, V. Olieric, C. Boland, J. Bailey, L. Vogeley, P. J. Stansfeld, N. Buddelmeijer, M. Wang, M. Caffrey
Structural Insights Into The Mechanism Of The Membrane Integral N-Acyltransferase Step In Bacterial Lipoprotein Synthesis.
Nat Commun V. 8 15952 2017
PubMed-ID: 28675161  |  Reference-DOI: 10.1038/NCOMMS15952

(-) Compounds

Molecule 1 - APOLIPOPROTEIN N-ACYLTRANSFERASE
    Chains: A
    EC Number: 2.3.1.-
    Engineered: YES
    Expression System: PSEUDOMONAS AERUGINOSA
    Expression System Cell Line: C41
    Expression System Taxid: 287
    Gene: LNT, CUTE, PA3984
    Organism Scientific: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
    Organism Taxid: 208964
    Strain: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1
    Synonym: ALP N-ACYLTRANSFERASE,COPPER HOMEOSTASIS PROTEIN CUTE HOMOLOG

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2GOL3Ligand/IonGLYCEROL
3OLC5Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:29 , ALA A:68 , TYR A:480 , GOL A:603binding site for residue GOL A 601
2AC2SOFTWAREVAL A:165 , TYR A:480 , ARG A:481 , VAL A:482 , LEU A:485 , GOL A:601binding site for residue GOL A 603
3AC3SOFTWARETRP A:9 , HIS A:12 , TRP A:56 , TRP A:59 , TRP A:60binding site for residue OLC A 605
4AC4SOFTWAREARG A:47 , LEU A:182 , VAL A:183 , PRO A:186 , HOH A:702binding site for residue OLC A 606
5AC5SOFTWARELEU A:105 , TRP A:108 , LEU A:342 , GLN A:343 , ASP A:344binding site for residue OLC A 607
6AC6SOFTWAREVAL A:165 , GLN A:479 , TYR A:480binding site for residue OLC A 608
7AC7SOFTWAREASP A:30 , TYR A:31 , TRP A:32binding site for residue OLC A 609
8AC8SOFTWAREASP A:117 , PRO A:120 , ARG A:187 , ARG A:246 , ARG A:253 , TYR A:282 , ALA A:285binding site for residues GOL A 602 and FLC A 604

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5N6M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5N6M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5N6M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5N6M)

(-) Exons   (0, 0)

(no "Exon" information available for 5N6M)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:491
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh.........hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.....eee....eeeeee.........hhhhhhhhhhhhhh......eeee...........hhhhhhhhhhhhhhh..eeeeeeeeeee.....eeeeeeeeeee.ee.eee............hhhhhh................eee..eeeeeee.hhhhhhhhhhhhhh...eeeeee........hhhhhhhhhhhhhhhhhh..eeeee....eeee.....eeeee......eeeeee..eee.hhhhhh.hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5n6m A   3 WISRPGWPGHLLALAAGALTPLALAPFDYWPLAILSIALLYLGLRGLPGKSALWRGWWYGFGAFGAGTSWIYVSIHDYGAASVPLASLLMLGFTAGVAFFFALPAWLWARCLRRDNAPLGDALAFAALWLALELFRSWFLTGFPWLYAGYSQLQGPLAGLVPVGGVWLSSFVIALSAALLVNLPRLFPHGASLLLGLVLLLGPWAAGLYLKGHAWTHSAGEPLRVVAIQGNIAQEPNQVRAQLDLYRDLSLPQQDVDLIVWPETAVPILQDMASGYLGAMGQVADEKNAALITGVPVRERLADGKSRYFNGITVVGEGAGTYLKQKLVPFGEYVPLQDLLRGLIASDFARGPADQPLLKAKGYQIAPYICYEVVYPEFAAALAAQSQVLLTVSNDTWFGTSIGPLQHLQMAQMRALESGRWMIRATNNGVTGLIDPYGRIVRQIPQFQQGILRGEVIPMQGLTPYLQYRVWPLAGLAGVLLLWALLGRQLR 503
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232    || 246       256       266       276       286       296       306       316       326       336       346    || 362       372       382       392       402       412       422       432       442       452       462       472       482       492       502 
                                                                                                                                                                                                                                                                    237|                                                                                                          351|                                                                                                                                                 
                                                                                                                                                                                                                                                                     242                                                                                                           358
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5N6M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5N6M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5N6M)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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