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(-) Description

Title :  A THERMALLY STABILISED VERSION OF PLASMODIUM FALCIPARUM RH5
 
Authors :  I. Campeotto, A. Goldenzweig, J. Davey, L. Barfod, J. M. Marshall, S. E. K. E. Wright, S. J. Draper, M. K. Higgins, S. J. Fleishman
Date :  27 Nov 16  (Deposition) - 28 Dec 16  (Release) - 08 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Malaria Immunogen Design Rosetta Pross, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Campeotto, A. Goldenzweig, J. Davey, L. Barfod, J. M. Marshall, S. E. Silk, K. E. Wright, S. J. Draper, M. K. Higgins, S. J. Fleishman
One-Step Design Of A Stable Variant Of The Malaria Invasion Protein Rh5 For Use As A Vaccine Immunogen.
Proc. Natl. Acad. Sci. V. 114 998 2017 U. S. A.
PubMed-ID: 28096331  |  Reference-DOI: 10.1073/PNAS.1616903114

(-) Compounds

Molecule 1 - RETICULOCYTE BINDING-LIKE PROTEIN 5,RETICULOCYTE BINDING PROTEIN 5
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RH5
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 5833
 
Molecule 2 - MONOCLONAL ANTIBODY 9AD4
    Chains: B
    Engineered: YES
    Expression System: ORYCTOLAGUS CUNICULUS
    Expression System Taxid: 9986
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 3 - MONOCLONAL ANTIBODY 9AD4
    Chains: C
    Engineered: YES
    Expression System: ORYCTOLAGUS CUNICULUS
    Expression System Taxid: 9986
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5MI0)

(-) Sites  (0, 0)

(no "Site" information available for 5MI0)

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1A:224 -A:317
2A:345 -A:351
3B:22 -B:96
4B:149 -B:204
5C:23 -C:92
6C:138 -C:198

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Phe B:155 -Pro B:156
2Glu B:157 -Pro B:158
3Trp B:197 -Pro B:198
4Ser C:7 -Pro C:8
5His C:80 -Pro C:81
6Val C:98 -Pro C:99
7Tyr C:144 -Pro C:145

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MI0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MI0)

(-) Exons   (0, 0)

(no "Exon" information available for 5MI0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.......eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mi0 A 160 SIDILQEKEGHLDFVIIPHYTFLEYYKHLSYNSIYHKSSTYGKYIAVDAFIKKINEAYDKVKSKCNDIKNDLIKTIKKLEHPYDAFKKMFDEYNTKKNKFINCIKNHENDFNKICNDMKNYGTNLFEQLSCYNNNFCNTNGIRYHYDEYIHKLILAVKSKNLNKDLNDMKNILQQSEKLLNNLEIYIDTIKFIHKEMKHIFNRIEYHTKIINDKTKIIQDKIKLNIWRTFQKDELLKKILDMSKEYALFITSDHLRQMLYNTFYSKEKHLNNIFHHLIYVL 501
                                   169       179       189       199       209       219       229       239   ||  304       314       324       334       344       354       364       374       384       394   ||  410       420       430       440       450       460       470       480       490       500 
                                                                                                             243|                                                                                                398|                                                                                                
                                                                                                              299                                                                                                 405                                                                                                


Chain B from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee......eee.......eeeeeehhh.eeeeee...hhhhheeeeeeeeeee...eeeeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeeee.hhh.....eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mi0 B   2 VKLVESGGGVVQPGGSRKLSCAASGFTFSDYGMAWVRQAPGKGPEWVTFISNMAYSIYYADTVTGRFTISRENAKNTLHLEMSSLRSEDTAMYYCTRAIFDYAGYWYFDVWGAGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR 222
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221 


Chain C from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee....ee..ee.eeeeee......eeee.............eeeeee..eeeeee...hhhhheeeeeee......ee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee....eeeeeee..eee...eeeee.........eeeeeeeeeehhhhh...eeeeeeee..eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mi0 C   1 DIVLTQSPASLAVSLGQRATISCRASESVEYYGTSLMQWFQQKPGQPPRLLIHGASNVQSGVPARFSGSGSGTDFSLNIHPVEEDDFAMYFCQQSTKVPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MI0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MI0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MI0)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Ligands, Modified Residues, Ions
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  Sites
(no "Sites" information available for 5mi0)
 
  Cis Peptide Bonds
    Glu B:157 - Pro B:158   [ RasMol ]  
    His C:80 - Pro C:81   [ RasMol ]  
    Phe B:155 - Pro B:156   [ RasMol ]  
    Ser C:7 - Pro C:8   [ RasMol ]  
    Trp B:197 - Pro B:198   [ RasMol ]  
    Tyr C:144 - Pro C:145   [ RasMol ]  
    Val C:98 - Pro C:99   [ RasMol ]  
 

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  Q8IFM5_PLAF7 | Q8IFM5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B2L3N7_PLAFA | B2L3N7: 4u0q 4u0r 4u1g
        Q8IFM5_PLAF7 | Q8IFM5: 4wat

(-) Related Entries Specified in the PDB File

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