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(-) Description

Title :  CRYSTAL STRUCTURE OF FULL-LENGH CSFV NS3/4A
 
Authors :  M. A. Tortorici, F. A. Rey
Date :  30 Jan 17  (Deposition) - 15 Feb 17  (Release) - 15 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.05
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Flaviviridae, Ns3/Ns4A, Protease/Helicase, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Dubrau, M. A. Tortorici, F. A. Rey, N. Tautz
A Positive-Strand Rna Virus Uses Alternative Protein-Protei Interactions Within A Viral Protease/Cofactor Complex To Switch Between Rna Replication And Virion Morphogenesis.
Plos Pathog. V. 13 06134 2017
PubMed-ID: 28151973  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1006134

(-) Compounds

Molecule 1 - GENOME POLYPROTEIN,GENOME POLYPROTEIN
    Chains: A, B
    EC Number: 3.4.22.-, 3.4.21.113, 3.6.1.15, 3.6.4.13, 2.7.7.48, 3.4.22.-, 3.4.21.113, 3.6.1.15, 3.6.4.13, 2.7.7.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 2293-2329,UNP RESIDUES 1590-2280
    Mutation: YES
    Organism Common: CSFV
    Organism Scientific: CLASSICAL SWINE FEVER VIRUS (STRAIN ALFORT)
    Organism Taxid: 11097
    Strain: ALFORT

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5MZ4)

(-) Sites  (0, 0)

(no "Site" information available for 5MZ4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MZ4)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Met A:524 -Pro A:525
2Met B:523 -Pro B:524

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MZ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MZ4)

(-) Exons   (0, 0)

(no "Exon" information available for 5MZ4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:704
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeeeee..hhhhh.........eeeeeeeeeee...hhhhhhhhhh.......ee........eeeeeee..eeeeeeee..eeeehhhhhh...eeeee..eeeee...eee....eeeee...........eeeeeeeeee.....eeeeeeeeee..eeeee.........hhhhhh.....eeee.....eeee..eeeee.....eee...hhhhhhhhhhhh.....eeeee.hhhhh..hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh....eeee............eeeeehhhhhh.hhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhh.eeeee..........eeeee.....eeee..eeee.hhhhh.eeeee.hhhhhhhhhhhhhhh...eeee........hhhhhh....eeeee.............eeee..eeeeeeeee......eeeeeeeee.hhhhhhhhhh.......eeeee..........hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhh......ee.eeee..eeeeee........ee.........eeehhhhhhhhhh........hhhhhhhhhhhhhhh.....eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mz4 A   1 SKRHIPVVTDIYSVEDHRLEDTTHLQYAPGSGSGPAVCKKVTEHERCTTSIMDKLTAFFGVMPRGTTPRAPVRFPTSLLKIRRGLETGWAYTHQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSGCPEGARCYVFNPEAVNISGTKGAMVHLQKTGGEFTCVTASGTPAFFDLKNLKGWAGLPIFEASSGRVVGRVKVGKNEDSKPTKLMSGATDLTEMVKKITTMNRGEFRQITLATGAGKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYMRQKHPSIAFNLRIGEMKEGDMATGITYASYGYFCQMSQPKLRAAMVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVAMTATPAGTVTHPIEEFIAPEVEYLDIAGLKIPVEEMKNNMLVFVPTRNMAVEAAKKLKAKGYNSGYYYSGEDPSNLRVVTSQSPYVVVATNAIESGVTLPDLDVVVDTGLKCEKRIRLSPKMPFIVTGLKRMAVTIGEQAQRRGRVGRVKPGRYYRSQETPVGSKDYHYDLLQAQRYGIEDGINITKSFREMNYDWSLYEEDSLMITQLEILNNLLISEELPMAVKNIMARTDHPEPIQLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVGLSTAENALL 732
                                    10        20        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395   ||  410    || 428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728    
                                                       29|                                                                                                                                                                                                   236|                                                                                                                                                        399|       415|                                                                                                                                                                                                                                                                                                                    
                                                        38                                                                                                                                                                                                    244                                                                                                                                                         405        424                                                                                                                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:679
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeeeeeeeee..hhhhh.........eeeeeeeeeee...hhhhhhhhhh.......ee........eeeeeee..eeeeeeee..eeeehhhhhh...eeeee..eeeee...eee....eeeee...........eeeeeeeeee.....eeeeeeeeee..eeeee.........hhhhhh.....eeee.....eeee..eeee......eee.....hhhhhhhhh.....eeeee........hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh....eeee............eeeeehhhhh..hhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeee....ee..........eeee..eeee.hhhhh...ee..hhhhhhhhhhhhhhh.............hhhhhh..hhhhh.ee..eeeeeeeee......eeeeeeeee.hhhhhhhhhh...ee..........hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhh......ee.eeee..eeeeee........ee.........eeehhhhhhhhhh........hhhhhhhhhhhhhhhhh..eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mz4 B  -4 LYFQGSKRHIPVVTDIYSVEDHRLEDTTHLQYAPGSGSGPAVCKKVTEHERCTTSIMDKLTAFFGVMPRGTTPRAPVRFPTSLLKIRRGLETGWAYTHQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSGCPEGARCYVFNPEAVNISGTKGAMVHLQKTGGEFTCVTASGTPAFFDLKNLKGWAGLPIFEASSGRVVGRVKVGKNEDSKPTKLMSGIQLTEMVKKITTMNRGEFRQITLATGAGKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYMRQKHPSIAFNLRIGEMKEGDMATGITYASYGYFCQMSQPKLRAAMVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVAMTAIEEFIAPEVMKGGSEYLDIAGLKIPVEEMKNNMLVFVPTRNMAVEAAKKLKAKGYNSGYYYSGEDPSNLRVVVATNAIEVVDTGLKCEKRIRLSPKMPFIVTGLKRMAVTIGEQAQRRGRVYYRSQETPVGSKDYHYDLLQAQRYGIEDGINITKSFREMNYDWSLYEEDSLMITQLEILNNLLISEELPMAVKNIMARTDHPEPIQLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVGLSTAENALL 731
                                     5        15        25   ||   43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233    || 251       261       271       281       291       301       311       321       331       341       351       361       371       381       391||     415  ||   428       438       448       458       468       478  ||   496|      515       525       535       545 ||    562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722         
                                                            29|                                                                                                                                                                                                     238|                                                                                                                                              392|        418|                                                        481|   496|                                      547|                                                                                                                                                                                
                                                             38                                                                                                                                                                                                      247                                                                                                                                               407         422                                                         490    506                                       555
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MZ4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MZ4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MZ4)

(-) Gene Ontology  (52, 52)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 5mz4)
 
  Cis Peptide Bonds
    Met A:524 - Pro A:525   [ RasMol ]  
    Met B:523 - Pro B:524   [ RasMol ]  
 

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  POLG_CSFVA | P19712
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLG_CSFVA | P19712: 4cbg 4cbh 4cbi 4cbl 4cbm

(-) Related Entries Specified in the PDB File

5lkl THE ALREADY RELEASED COORDINATES 5LKL, CONTAIN SOME MISTAKES. IN THIS NEW ENTRY THE MISTAKES ARE CORRECTED.