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(-) Description

Title :  LAMBDA-[RU(PHEN)2(DPPZ)]2+ BOUND TO A SHORT SUBSTITUTED DNA SEQUENCE
 
Authors :  J. P. Hall, C. J. Cardin
Date :  04 Jul 16  (Deposition) - 15 Feb 17  (Release) - 19 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.28
Chains :  Asym./Biol. Unit :  A,C
Keywords :  Dna, Ruthenium, Intercalation, Light-Switch (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. P. Hall, S. P. Gurung, J. Henle, P. Poidl, J. Andersson, P. Lincoln, G. Winter, T. Sorensen, D. J. Cardin, J. A. Brazier, C. J. Cardin
Guanine Can Direct Binding Specificity Of Ru-Dipyridophenazine (Dppz) Complexes To Dna Through Steric Effects.
Chemistry V. 23 4981 2017
PubMed-ID: 28105682  |  Reference-DOI: 10.1002/CHEM.201605508

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*CP*CP*G)-3')
    ChainsA
    EngineeredYES
    Organism ScientificSYNTHETIC CONSTRUCT
    Organism Taxid32630
    SyntheticYES
 
Molecule 2 - DNA (5'-D(*(CBR)P*GP*GP*C)-3')
    ChainsC
    EngineeredYES
    Organism ScientificSYNTHETIC CONSTRUCT
    Organism Taxid32630
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
15BT1Mod. Nucleotide5-BROMO-2'-DEOXYCYTIDINE
2BA1Ligand/IonBARIUM ION
3RKP1Ligand/IonLAMBDA-RU(PHEN)2(DPPZ) COMPLEX

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:1binding site for residue BA A 101
2AC2SOFTWAREDC A:3 , DG A:4 , 5BT C:1 , DG C:2 , DG C:3 , HOH C:214 , HOH C:219binding site for residue RKP C 101

(-) SS Bonds  (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:DNA  Length:4
                                  
                   5lfw A 1 GCCG 4

Chain C from PDB  Type:DNA  Length:4
                                  
                   5lfw C 1 xGGC 4
                            |   
                            |   
                            1-5BT

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(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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