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(-) Description

Title :  STRUCTURE OF THE TRANSMEMBRANE DOMAIN OF HIV-1 GP41 IN BICELLE
 
Authors :  J. Dev, Q. Fu, D. Park, B. Chen, J. J. Chou
Date :  14 May 16  (Deposition) - 29 Jun 16  (Release) - 20 Jul 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B,C  (15x)
NMR Structure *:  A,B,C  (1x)
Keywords :  Transmembrane Domain, Lipid Bilayer, Transmembrane Trimer, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Dev, D. Park, Q. Fu, J. Chen, H. J. Ha, F. Ghantous, T. Herrmann, W. Chang, Z. Liu, G. Frey, M. S. Seaman, B. Chen, J. J. Chou
Structural Basis For Membrane Anchoring Of Hiv-1 Envelope Spike.
Science V. 353 172 2016
PubMed-ID: 27338706  |  Reference-DOI: 10.1126/SCIENCE.AAF7066

(-) Compounds

Molecule 1 - ENVELOPE GLYCOPROTEIN GP160
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector: PMM-LR6
    Fragment: GP41 DOMAIN RESIDUES 670-709
    Gene: ENV
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676

 Structural Features

(-) Chains, Units

  123
NMR Structure (15x): ABC
NMR Structure * (1x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5JYN)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JYN)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JYN)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:40
                                                                        
               SCOP domains ---------------------------------------- SCOP domains
               CATH domains ---------------------------------------- CATH domains
               Pfam domains ---------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------- PROSITE
                 Transcript ---------------------------------------- Transcript
                 5jyn A 677 NWLWYIRIFIIIVGSLIGLRIVFAVLSLVNRVRQGYSPLS 716
                                   686       696       706       716


Chain B from PDB  Type:PROTEIN  Length:40
                                                                        
               SCOP domains ---------------------------------------- SCOP domains
               CATH domains ---------------------------------------- CATH domains
               Pfam domains ---------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------- PROSITE
                 Transcript ---------------------------------------- Transcript
                 5jyn B 677 NWLWYIRIFIIIVGSLIGLRIVFAVLSLVNRVRQGYSPLS 716
                                   686       696       706       716


Chain C from PDB  Type:PROTEIN  Length:40
                                                                        
               SCOP domains ---------------------------------------- SCOP domains
               CATH domains ---------------------------------------- CATH domains
               Pfam domains ---------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------- PROSITE
                 Transcript ---------------------------------------- Transcript
                 5jyn C 677 NWLWYIRIFIIIVGSLIGLRIVFAVLSLVNRVRQGYSPLS 716
                                   686       696       706       716
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JYN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JYN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JYN)

(-) Gene Ontology  (12, 12)

NMR Structure(hide GO term definitions)

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