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(-) Description

Title :  CRYSTAL STRUCTURE OF ER GLUCOSIDASE II HETERODIMERIC COMPLEX CONSISTING OF CATALYTIC SUBUNIT AND THE BINDING DOMAIN OF REGULATORY SUBUNIT
 
Authors :  T. Satoh, T. Toshimori, M. Noda, S. Uchiyama, K. Kato
Date :  05 May 16  (Deposition) - 14 Sep 16  (Release) - 16 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Protein Transport, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Satoh, T. Toshimori, M. Noda, S. Uchiyama, K. Kato
Interaction Mode Between Catalytic And Regulatory Subunits In Glucosidase Ii Involved In Er Glycoprotein Quality Control.
Protein Sci. V. 25 2095 2016
PubMed-ID: 27576940  |  Reference-DOI: 10.1002/PRO.3031

(-) Compounds

Molecule 1 - ALPHA GLUCOSIDASE-LIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCOLD-GST (MODIFIED)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CTHT_0064960
    Organism Scientific: CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS 144.50 / IMI 039719)
    Organism Taxid: 759272
    Strain: DSM 1495 / CBS 144.50 / IMI 039719
 
Molecule 2 - GLUCOSIDASE 2 SUBUNIT BETA-LIKE PROTEIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET16B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 21-162
    Gene: CTHT_0046400
    Organism Scientific: CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS 144.50 / IMI 039719)
    Organism Taxid: 759272
    Strain: DSM 1495 / CBS 144.50 / IMI 039719

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:443 , ASP A:556 , ARG A:617 , TRP A:630 , ASP A:633 , PHE A:666 , HIS A:691 , HOH A:1153 , HOH A:1198binding site for residue TRS A 1001
2AC2SOFTWAREGLN B:56 , ASP B:59 , SER B:61 , ASP B:63 , ASP B:69 , GLU B:70binding site for residue CA B 1001
3AC3SOFTWARETYR B:121 , ASP B:124 , VAL B:126 , ASP B:128 , ASP B:137 , GLU B:138binding site for residue CA B 1002

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1B:44 -B:64
2B:62 -B:76
3B:107 -B:132
4B:127 -B:147
5B:133 -B:151

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Ala A:180 -Pro A:181
2Pro A:275 -Ser A:276
3Gly A:383 -Pro A:384
4Trp A:415 -Asn A:416
5Glu A:559 -Pro A:560
6Glu A:706 -Pro A:707

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JQP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JQP)

(-) Exons   (0, 0)

(no "Exon" information available for 5JQP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:918
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhh.......eee.hhhheee..eeeeeeeee......eeeeeeeeee.....eeeee.hhhhhh.................hhhhhhh..........eeee....eeeeeehhhhheeeeee....eeeeee..eeeeee......ee.................eee..eee........eeeeeeee...eeee.......................eee.....................eeeeee..eeeeeee.....eeeeeeeee.............eeeeeeeee....eeeeee...hhhhhhhhhhhhhh.....hhhhhh.ee......hhhhhhhhhhhhhhh.....eeeehhhhh..............hhhhhhhhhhh...eeeee...eee....hhhhhhhhhh.............eee..eeeee....hhhhhhhhhhhh...........eeeee.........hhhhh.....ee...eehhhhh.hhhhhhhhhhhhhhh...........eee.....hhhhh.eee......hhhhhhhhhhhhhhhhhh....ee..........hhhhhhhhhhhhh.....ee.........hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhh..hhhhh.....eee....eee.........eeeeee.....eee.....ee...eeeeee.......eeee..eeeee......hhhhhh...eeeeee......eeeeeee.....hhhhhh..eeeeeeee..eeeeee........hhhhhhhh..eeeeeeee..hhhhh...eeeeee..eeeeeeeeee........eeeeeeeeee....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5jqp A  34 HDWKKCDQSGFCRRNRAYADHALSAISWESPYKIAPETGSFKDGQYQAIILKTINDHGETVRLPLTVSFLESGTARVTIDEEKRQKGEIELRHDSKARKERYNEAEQWVIVGGMTLDKGAKVDYEDKTQMTVKYGPSSKFEATIKFAPFSIDFKRDGASHIKFNDQGLLNIEHWRPKIDPEDDSTWWEESFGGNTDSKPRGPESVGLDISFVGYEHVFGIPSHASPLSLKQTRGGEGNYNEPYRMYNADVFEYILDSPMTLYGSIPFMQAHRKDSSVGIFWLNAAETWVDITKGKDSKNPLALGVKSKITTRTHWFSESGLLDVFVFLGPTPKDIISKYAELTGTTAMPQEFSLGYHQCRWNYVSDEDVKDVDRKMDKFNMPYDVIWLDIEYTDEKKYFTWDKHSFKDPIGMGKQLEAHGRKLVTIIDPHIKNTNNYPVVDELKSKDLAVKTKDGSIFEGWCWPGSSHWIDAFNPAAREWWKGLFKYDKFKGTMENTFIWNDMNEPSVFNGPEVTMPKDNLHHGNWEHRDVHNLNGMTFQNATYHALLSRKPGEHRRPFVLTRAFFAGSQRLGAMWTGDNTADWGYLKASIPMVLSQGIAGFPFAGADVGGFFGNPDKDLLTRWYQTGIFYPFFRAHAHIDARRREPYLTGEPYNTIIAAALRLRYSLLPSWYTAFRHAHLDGTPIIKPMFYTHPSEEAGLPIDDQFFIGNTGLLAKPVTDKDRTSVDIWIPDSEVYYDYFTYDIISKSKTATLDAPLEKIPLLMRGGHVFARRDIPRRSSALMKWDPYTLVVVLGNDRKAEGDLYVDDGDSFDYEKGQYIHRRFIFDANTLTSADYEGRDDKEGEWLKKMRTVNVEKIIVVGAPAAWKGKKTVTVESEGKTWAAAIEYNPAEKSRAAFAVVKKVGVRVGADFKIVFG 977
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213|      244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794      |806       816       826       836       846       856       866       876       886       896 ||    909       919       929       939       949       959       969        
                                                                                                                                                                                                             213|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   801|                                                                                           898|                                                                           
                                                                                                                                                                                                              235                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    804                                                                                            902                                                                           


Chain B from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhh....eee.......eee.hhh...............................................eee.......eeehhhhh............hhhhh.hhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jqp B  24 LPRGVGPEFAKYYTSQGTFTCIGTPSITLSSSQINDNSCDCPDGSDEPGTAACAHLDRLSPEQPLPGSLTGTTNTTSTLPGFWCANEGHIGSYIPFMYVNDGVCDYELCCDGSDEYAHAGGVQCENRCAAI 154
                                    33        43        53        63        73        83        93       103       113       123       133       143       153
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JQP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JQP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JQP)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:180 - Pro A:181   [ RasMol ]  
    Glu A:559 - Pro A:560   [ RasMol ]  
    Glu A:706 - Pro A:707   [ RasMol ]  
    Gly A:383 - Pro A:384   [ RasMol ]  
    Pro A:275 - Ser A:276   [ RasMol ]  
    Trp A:415 - Asn A:416   [ RasMol ]  
 

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  5jqp
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        G0SG42_CHATD | G0SG42: 5dkx 5dky 5dkz 5dl0

(-) Related Entries Specified in the PDB File

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