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(-) Description

Title :  EFFICIENT TARGETING OF THE ASIALOGLYCOPROTEIN RECEPTOR BY POLYVALENT DISPLAY OF A COMPACT GALACTOSAMINE MIMIC
 
Authors :  S. Liu
Date :  04 May 16  (Deposition) - 14 Jun 17  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.83
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Asialoglycoprotein Receptor, Carbohydrates, Liver Targeting, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. A. Sanhueza, M. M. Baksh, B. Thuma, M. D. Roy, S. Dutta, C. Preville, B. A. Chrunyk, K. Beaumont, R. Dullea, M. Ammirati, S. Liu, D. Gebhard, J. E. Finley, C. T. Salatto, A. King-Ahmad, I. Stock, K. Atkinson, B. Reidich, W. Lin, R. Kumar, M. Tu, E. Menhaji-Klotz, D. A. Price, S. Liras, M. G. Finn, V. Mascitti
Efficient Liver Targeting By Polyvalent Display Of A Compac Ligand For The Asialoglycoprotein Receptor.
J. Am. Chem. Soc. V. 139 3528 2017
PubMed-ID: 28230359  |  Reference-DOI: 10.1021/JACS.6B12964

(-) Compounds

Molecule 1 - ASIALOGLYCOPROTEIN RECEPTOR 1
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR PPPARG4
    Expression System Taxid1182032
    GeneASGR1, CLEC4H1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymASGPR 1,C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER H1,HEPATIC LECTIN H1,HL-1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1CA6Ligand/IonCALCIUM ION
2CL1Ligand/IonCHLORIDE ION
3ZPF2Ligand/IonN-[(1S,2R,3R,4R,5S)-2,3-DIHYDROXY-1-(HYDROXYMETHYL)-6,8-DIOXABICYCLO[3.2.1]OCTAN-4-YL]ACETAMIDE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:215 , ASP A:242 , GLU A:252 , ASP A:253 , HOH A:1125 , HOH A:1133binding site for residue CA A 1001
2AC2SOFTWAREGLN A:239 , ASP A:241 , GLU A:252 , ASN A:264 , ASP A:265 , ZPF A:1004binding site for residue CA A 1002
3AC3SOFTWAREVAL A:190 , GLU A:196 , GLU A:277binding site for residue CA A 1003
4AC4SOFTWAREGLN A:239 , ASP A:241 , GLU A:252 , ASN A:264 , ASP A:265 , CA A:1002 , HOH A:1111 , HOH A:1112 , HOH A:1140binding site for residue ZPF A 1004
5AC5SOFTWAREARG A:270 , HOH A:1158 , ARG B:270 , HOH B:1173binding site for residue CL A 1005
6AC6SOFTWAREASP B:215 , ASP B:242 , GLU B:252 , ASP B:253 , HOH B:1141 , HOH B:1160 , HOH B:1162binding site for residue CA B 1001
7AC7SOFTWAREGLN B:239 , ASP B:241 , GLU B:252 , ASN B:264 , ASP B:265 , ZPF B:1003binding site for residue CA B 1002
8AC8SOFTWAREGLN B:239 , ASP B:241 , GLU B:252 , ASN B:264 , ASP B:265 , CA B:1002 , HOH B:1146binding site for residue ZPF B 1003
9AC9SOFTWAREVAL B:190 , GLU B:196 , GLU B:277 , HOH B:1116 , HOH B:1130 , HOH B:1167binding site for residue CA B 1004

(-) SS Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1A:152 -B:152
2A:153 -A:164
3A:181 -A:276
4A:254 -A:268
5B:153 -B:164
6B:181 -B:276
7B:254 -B:268

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gln A:239 -Pro A:240
2Gln B:239 -Pro B:240

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JQ1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JQ1)

(-) Exons   (0, 0)

(no "Exon" information available for 5JQ1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee..eeeee.....hhhhhhhhhhhh..ee....hhhhhhhhhhhhh...eeeeee......ee...............................eeee.....eeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jq1 A 151 TCCPVNWVEHERSCYWFSRSGKAWADADNYCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQPDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETEL 280
                                   160       170       180       190       200       210       220       230       240       250       260       270       280

Chain B from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhhh..ee....hhhhhhhhhhhhh...eeeeee......ee...............................eeee.....eeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jq1 B 152 CCPVNWVEHERSCYWFSRSGKAWADADNYCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQPDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETEL 280
                                   161       171       181       191       201       211       221       231       241       251       261       271         

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JQ1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JQ1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JQ1)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ASGR1_HUMAN | P073061dv8 5jpv

(-) Related Entries Specified in the PDB File

5jpv 5JPC CONTAINS THE SAME PROTEIN IN COMPLEX WITH LACTOSE