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(-) Description

Title :  E73V MUTANT OF THE HUMAN VOLTAGE-DEPENDENT ANION CHANNEL
 
Authors :  M. Jaremko, L. Jaremko, S. Villinger, C. Schmidt, K. Giller, C. Griesin S. Becker, M. Zweckstetter
Date :  17 Apr 16  (Deposition) - 10 Aug 16  (Release) - 31 Aug 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Membrane Protein, Structure Refinement, Sparse Data, Protein Dynamics, Relaxation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Jaremko, S. Villinger, C. D. Schmidt, C. Griesinger, S. Becker, M. Zweckstetter
High-Resolution Nmr Determination Of The Dynamic Structure Of Membrane Proteins.
Angew. Chem. Int. Ed. Engl. V. 55 10518 2016
PubMed-ID: 27461260  |  Reference-DOI: 10.1002/ANIE.201602639

(-) Compounds

Molecule 1 - VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: VDAC1, VDAC
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: SAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWTEYGL TFTVKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDMDFDIAGPSI RGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVN LAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLG LGLEFQARS
    Synonym: HVDAC1,OUTER MITOCHONDRIAL MEMBRANE PROTEIN PORIN 1, PLASMALEMMAL PORIN,PORIN 31HL,PORIN 31HM

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5JDP)

(-) Sites  (0, 0)

(no "Site" information available for 5JDP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JDP)

(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Gly A:135 -Pro A:136

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JDP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JDP)

(-) Exons   (0, 0)

(no "Exon" information available for 5JDP)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:285
                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhh.....eeeeeeee.......eeeeeeee.....eeeeeeeeee.....eeeeeee.....eeeeeeee.....eeeeeeeeeeehhhheeeeeeeeeeee..eeeeeeee......eeeeeeeeee..eeeeeeeeee....eeeeeeeeeeeee..eeeeeeee...eeeeeeeee....eeeeeeeeee......eeeeeeeeeee..eeeeeeee...eeeeeeeeee...eeeeeeeeee.........eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jdp A   1 SAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWTEYGLTFTVKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQARS 285
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JDP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JDP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JDP)

(-) Gene Ontology  (39, 39)

NMR Structure(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:135 - Pro A:136   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VDAC1_HUMAN | P21796: 2jk4 2k4t 5xdn 5xdo

(-) Related Entries Specified in the PDB File

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