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(-) Description

Title :  PSEUDO-ATOMIC STRUCTURE OF HUMAN PAPILLOMAVIRUS TYPE 59 L1 VIRUS-LIKE PARTICLE
 
Authors :  Z. H. Li, X. D. Yan, H. Yu, Q. B. Zheng, Y. Gu, S. W. Li
Date :  13 Apr 16  (Deposition) - 18 May 16  (Release) - 06 Jul 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  6.00
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D,E,F  (60x)
Keywords :  Capsid, T=7 Icosahedral, Virus-Like Particle, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Li, X. Yan, H. Yu, D. Wang, S. Song, Y. Li, M. He, Q. Hong, Q. Zheng, Q. Zhao, Y. Gu, J. Zhang, M. E. Janssen, G. Cardone, N. H. Olson, T. S. Baker, S. Li, N. Xia
The C-Terminal Arm Of The Human Papillomavirus Major Capsid Protein Is Immunogenic And Involved In Virus-Host Interaction.
Structure V. 24 874 2016
PubMed-ID: 27276427  |  Reference-DOI: 10.1016/J.STR.2016.04.008

(-) Compounds

Molecule 1 - MAJOR CAPSID PROTEIN L1
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTO-T7
    Expression System Strain: ER2566
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 10-508
    Gene: ORF PUTATIVE L1, L1
    Organism Scientific: HUMAN PAPILLOMAVIRUS TYPE 59
    Organism Taxid: 37115

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (60x): ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5JB1)

(-) Sites  (0, 0)

(no "Site" information available for 5JB1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JB1)

(-) Cis Peptide Bonds  (55, 55)

Asymmetric Unit
No.Residues
1Gly A:56 -Asn A:57
2Gly A:58 -Arg A:59
3Thr A:408 -Pro A:409
4Val B:11 -Tyr B:12
5Pro B:15 -Pro B:16
6Pro B:16 -Ser B:17
7Val B:18 -Ala B:19
8Gly B:56 -Asn B:57
9Gly B:58 -Arg B:59
10His B:133 -Val B:134
11Gly B:406 -Val B:407
12Ser B:414 -Leu B:415
13Ala B:426 -Val B:427
14Val B:437 -Lys B:438
15Gly C:56 -Asn C:57
16Gly C:58 -Arg C:59
17Ala C:135 -Ser C:136
18Ser C:136 -Ala C:137
19Phe C:405 -Gly C:406
20Gly C:406 -Val C:407
21Pro C:409 -Pro C:410
22Pro C:410 -Pro C:411
23Ala C:413 -Ser C:414
24Tyr C:419 -Arg C:420
25Gly D:56 -Asn D:57
26Gly D:58 -Arg D:59
27Val D:407 -Thr D:408
28Pro D:409 -Pro D:410
29Pro D:411 -Thr D:412
30Ser D:414 -Leu D:415
31Tyr D:419 -Arg D:420
32Ser D:424 -Ala D:425
33Ala D:426 -Val D:427
34Asp D:440 -Pro D:441
35Gly E:56 -Asn E:57
36Gly E:58 -Arg E:59
37Ser E:136 -Ala E:137
38Pro E:410 -Pro E:411
39Pro E:411 -Thr E:412
40Thr E:412 -Ala E:413
41Ala E:413 -Ser E:414
42Ser E:424 -Ala E:425
43Asp E:432 -Thr E:433
44Tyr F:12 -Leu F:13
45Pro F:16 -Ser F:17
46Gly F:56 -Asn F:57
47Gly F:58 -Arg F:59
48Phe F:83 -Gly F:84
49Gly F:84 -Leu F:85
50Pro F:93 -Asn F:94
51Asn F:404 -Phe F:405
52Thr F:408 -Pro F:409
53Phe F:421 -Val F:422
54Pro F:436 -Val F:437
55Asp F:440 -Pro F:441

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JB1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JB1)

(-) Exons   (0, 0)

(no "Exon" information available for 5JB1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:456
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhh.......eeee....eeee.....ee.......ee........eeeeee...................eeeeeeeeee..ee........eeeeee.....................eeeee...eeeeeeee...eeeeeeee................eeeeeeee.............hhhhhh......hhhhhh....eehhhhhhh........eeeeeeeeeeeeeee...ee............hhhhhh.....eeeeee...ee.hhh.....ee...........hhh.eeeeeeee.hhh..eeeeee.........hhh.eeeeeeeeeeee.eeeeeeeeee....hhhhhhhhhhhhhhh........hhhhhhhh.....................hhhhhh..eeee...........hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5jb1 A  18 VAKVVSTDEYVTRTSIFYHAGSSRLLTVGHPYFKVPKGGNGRQDVPKVSAYQYRVFRVKLPDPNKFGLPDNTVYDPNSQRLVWACVGVEIGRGQPLGVGLSGHPLYNKLDDTENSHVASAVDTKDTRDNVSVDYKQTQLCIIGCVPAIGEHWTKGTACKPTTVVQGDCPPLELINTPIEDGDMVDTGYGAMDFKLLQDNKSEVPLDICQSICKYPDYLQMSADAYGDSMFFCLRREQVFARHFWNRSGTMGDQLPESLYIKGTDIRANPGSYLYSPSPSGSVVTSDSQLFNKPYWLHKAQGLNNGICWHNQLFLTVVDTTRSTNLSVCASTTSSIPNVYTPTSFKEYARHVEEFDLQFIFQLCKITLTTEVMSYIHNMNTTILEDWNFGVTPPPTASLVDTYRFVQSAAVTCQKDTAPPVKQDPYDKLKFWPVDLKERFSADLDQFPLGRKFLLQL 473
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467      


Chain B from PDB  Type:PROTEIN  Length:464
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhh........eeee...eeee........................eeeeee...................eeee..eeeeeeee........eeeeee.eeee................eeeee...eeeeeeee...eeeeeeee................eeeeeeee............eehhhhh......hhhhhh.ee.eehhhhhhhh.......eeeeeeeeeeeeeeee...........................eeeeee...ee.........ee...........hhh.eeeeeeee.....eeeeeee.........hhh.eeeeeeeeeeeeeeeee..eeee.hhhhhhhhhhhhhhhhhhh.....................................hhhhh..eeee.hhhh......hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jb1 B  10 KVYLPPPSVAKVVSTDEYVTRTSIFYHAGSSRLLTVGHPYFKVPKGGNGRQDVPKVSAYQYRVFRVKLPDPNKFGLPDNTVYDPNSQRLVWACVGVEIGRGQPLGVGLSGHPLYNKLDDTENSHVASAVDTKDTRDNVSVDYKQTQLCIIGCVPAIGEHWTKGTACKPTTVVQGDCPPLELINTPIEDGDMVDTGYGAMDFKLLQDNKSEVPLDICQSICKYPDYLQMSADAYGDSMFFCLRREQVFARHFWNRSGTMGDQLPESLYIKGTDIRANPGSYLYSPSPSGSVVTSDSQLFNKPYWLHKAQGLNNGICWHNQLFLTVVDTTRSTNLSVCASTTSSIPNVYTPTSFKEYARHVEEFDLQFIFQLCKITLTTEVMSYIHNMNTTILEDWNFGVTPPPTASLVDTYRFVQSAAVTCQKDTAPPVKQDPYDKLKFWPVDLKERFSADLDQFPLGRKFLLQL 473
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469    


Chain C from PDB  Type:PROTEIN  Length:457
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhheeeeeeeeee....eeeee.....ee.......ee........eeeeee...................eeeeeeeeeeeee.........eeeeee...ee................eeeee...eeeeeeee...eeeeeeee................eeeeeeee............eehhhhh.............ee.eehhhhhhhh.......eeeeeeee...eeee...ee....hhhhh...hhhhh......eeee.....ee.hhh.....ee...........hhh.eeeeeeee.....eeeeeee.............eeeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhh............................................eeee.......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jb1 C  17 SVAKVVSTDEYVTRTSIFYHAGSSRLLTVGHPYFKVPKGGNGRQDVPKVSAYQYRVFRVKLPDPNKFGLPDNTVYDPNSQRLVWACVGVEIGRGQPLGVGLSGHPLYNKLDDTENSHVASAVDTKDTRDNVSVDYKQTQLCIIGCVPAIGEHWTKGTACKPTTVVQGDCPPLELINTPIEDGDMVDTGYGAMDFKLLQDNKSEVPLDICQSICKYPDYLQMSADAYGDSMFFCLRREQVFARHFWNRSGTMGDQLPESLYIKGTDIRANPGSYLYSPSPSGSVVTSDSQLFNKPYWLHKAQGLNNGICWHNQLFLTVVDTTRSTNLSVCASTTSSIPNVYTPTSFKEYARHVEEFDLQFIFQLCKITLTTEVMSYIHNMNTTILEDWNFGVTPPPTASLVDTYRFVQSAAVTCQKDTAPPVKQDPYDKLKFWPVDLKERFSADLDQFPLGRKFLLQL 473
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       


Chain D from PDB  Type:PROTEIN  Length:454
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeeee...eeeee.....ee.......ee........eeeeee...................eeeeeeeeeee...........eeeeee.....................eeeee...eeeeeeee....eeeeeee................eeeeeee..............hhhhhh..................hhhhhhh........eeeeeeee....ee....ee....hhhhh...hhhhhh......ee......ee.hhh.....ee...........hhh.eeeeeee......eeeeeee.........hhh.eeeeeeeeeee..eeeeeeeeee.hhhhhhhhhhhhhhhhhh.............................................eeee....ee.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jb1 D  20 KVVSTDEYVTRTSIFYHAGSSRLLTVGHPYFKVPKGGNGRQDVPKVSAYQYRVFRVKLPDPNKFGLPDNTVYDPNSQRLVWACVGVEIGRGQPLGVGLSGHPLYNKLDDTENSHVASAVDTKDTRDNVSVDYKQTQLCIIGCVPAIGEHWTKGTACKPTTVVQGDCPPLELINTPIEDGDMVDTGYGAMDFKLLQDNKSEVPLDICQSICKYPDYLQMSADAYGDSMFFCLRREQVFARHFWNRSGTMGDQLPESLYIKGTDIRANPGSYLYSPSPSGSVVTSDSQLFNKPYWLHKAQGLNNGICWHNQLFLTVVDTTRSTNLSVCASTTSSIPNVYTPTSFKEYARHVEEFDLQFIFQLCKITLTTEVMSYIHNMNTTILEDWNFGVTPPPTASLVDTYRFVQSAAVTCQKDTAPPVKQDPYDKLKFWPVDLKERFSADLDQFPLGRKFLLQL 473
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469    


Chain E from PDB  Type:PROTEIN  Length:454
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeeeeeeeeee.....ee.......ee........eeeeee..hhhhh............eeeeeeeeeeeeee........eeeeee.....................eeeee...eeeeeeee....eeeeeee................eeeeeee..............hhhhhh......hhhhhh....ee..hhhhh........eeeeeeee....eee...ee....hhhhh...hhhhh......eee......ee.hhh..................hhh.eeeeeeee.....eeeeeee.........hhh.eeeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhh.....................................hhhhh..eeee...........hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jb1 E  20 KVVSTDEYVTRTSIFYHAGSSRLLTVGHPYFKVPKGGNGRQDVPKVSAYQYRVFRVKLPDPNKFGLPDNTVYDPNSQRLVWACVGVEIGRGQPLGVGLSGHPLYNKLDDTENSHVASAVDTKDTRDNVSVDYKQTQLCIIGCVPAIGEHWTKGTACKPTTVVQGDCPPLELINTPIEDGDMVDTGYGAMDFKLLQDNKSEVPLDICQSICKYPDYLQMSADAYGDSMFFCLRREQVFARHFWNRSGTMGDQLPESLYIKGTDIRANPGSYLYSPSPSGSVVTSDSQLFNKPYWLHKAQGLNNGICWHNQLFLTVVDTTRSTNLSVCASTTSSIPNVYTPTSFKEYARHVEEFDLQFIFQLCKITLTTEVMSYIHNMNTTILEDWNFGVTPPPTASLVDTYRFVQSAAVTCQKDTAPPVKQDPYDKLKFWPVDLKERFSADLDQFPLGRKFLLQL 473
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469    


Chain F from PDB  Type:PROTEIN  Length:464
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhh.ee....eeee...eeeee.....ee.......ee........eeeeee...................eeeeeeeeeeeeee........eeeeee.....................eeeee...eeeeeeee...eeeeeeee................eeeeeeee....ee.......hhhhhh......hhhhh...eeeehhhhhhhh.......eeeeeee.eeeeeee.................hhhhh......eeeeee....hhhhh....eee...........hhh.eeeeeeee......eeeeee.........hhh.eeeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhh...................................hhhhhh....eeee...........hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jb1 F  10 KVYLPPPSVAKVVSTDEYVTRTSIFYHAGSSRLLTVGHPYFKVPKGGNGRQDVPKVSAYQYRVFRVKLPDPNKFGLPDNTVYDPNSQRLVWACVGVEIGRGQPLGVGLSGHPLYNKLDDTENSHVASAVDTKDTRDNVSVDYKQTQLCIIGCVPAIGEHWTKGTACKPTTVVQGDCPPLELINTPIEDGDMVDTGYGAMDFKLLQDNKSEVPLDICQSICKYPDYLQMSADAYGDSMFFCLRREQVFARHFWNRSGTMGDQLPESLYIKGTDIRANPGSYLYSPSPSGSVVTSDSQLFNKPYWLHKAQGLNNGICWHNQLFLTVVDTTRSTNLSVCASTTSSIPNVYTPTSFKEYARHVEEFDLQFIFQLCKITLTTEVMSYIHNMNTTILEDWNFGVTPPPTASLVDTYRFVQSAAVTCQKDTAPPVKQDPYDKLKFWPVDLKERFSADLDQFPLGRKFLLQL 473
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JB1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JB1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JB1)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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Asymmetric Unit
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  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 5jb1)
 
  Sites
(no "Sites" information available for 5jb1)
 
  Cis Peptide Bonds
    Ala B:426 - Val B:427   [ RasMol ]  
    Ala C:135 - Ser C:136   [ RasMol ]  
    Ala C:413 - Ser C:414   [ RasMol ]  
    Ala D:426 - Val D:427   [ RasMol ]  
    Ala E:413 - Ser E:414   [ RasMol ]  
    Asn F:404 - Phe F:405   [ RasMol ]  
    Asp D:440 - Pro D:441   [ RasMol ]  
    Asp E:432 - Thr E:433   [ RasMol ]  
    Asp F:440 - Pro F:441   [ RasMol ]  
    Gly A:56 - Asn A:57   [ RasMol ]  
    Gly A:58 - Arg A:59   [ RasMol ]  
    Gly B:406 - Val B:407   [ RasMol ]  
    Gly B:56 - Asn B:57   [ RasMol ]  
    Gly B:58 - Arg B:59   [ RasMol ]  
    Gly C:406 - Val C:407   [ RasMol ]  
    Gly C:56 - Asn C:57   [ RasMol ]  
    Gly C:58 - Arg C:59   [ RasMol ]  
    Gly D:56 - Asn D:57   [ RasMol ]  
    Gly D:58 - Arg D:59   [ RasMol ]  
    Gly E:56 - Asn E:57   [ RasMol ]  
    Gly E:58 - Arg E:59   [ RasMol ]  
    Gly F:56 - Asn F:57   [ RasMol ]  
    Gly F:58 - Arg F:59   [ RasMol ]  
    Gly F:84 - Leu F:85   [ RasMol ]  
    His B:133 - Val B:134   [ RasMol ]  
    Phe C:405 - Gly C:406   [ RasMol ]  
    Phe F:421 - Val F:422   [ RasMol ]  
    Phe F:83 - Gly F:84   [ RasMol ]  
    Pro B:15 - Pro B:16   [ RasMol ]  
    Pro B:16 - Ser B:17   [ RasMol ]  
    Pro C:409 - Pro C:410   [ RasMol ]  
    Pro C:410 - Pro C:411   [ RasMol ]  
    Pro D:409 - Pro D:410   [ RasMol ]  
    Pro D:411 - Thr D:412   [ RasMol ]  
    Pro E:410 - Pro E:411   [ RasMol ]  
    Pro E:411 - Thr E:412   [ RasMol ]  
    Pro F:16 - Ser F:17   [ RasMol ]  
    Pro F:436 - Val F:437   [ RasMol ]  
    Pro F:93 - Asn F:94   [ RasMol ]  
    Ser B:414 - Leu B:415   [ RasMol ]  
    Ser C:136 - Ala C:137   [ RasMol ]  
    Ser D:414 - Leu D:415   [ RasMol ]  
    Ser D:424 - Ala D:425   [ RasMol ]  
    Ser E:136 - Ala E:137   [ RasMol ]  
    Ser E:424 - Ala E:425   [ RasMol ]  
    Thr A:408 - Pro A:409   [ RasMol ]  
    Thr E:412 - Ala E:413   [ RasMol ]  
    Thr F:408 - Pro F:409   [ RasMol ]  
    Tyr C:419 - Arg C:420   [ RasMol ]  
    Tyr D:419 - Arg D:420   [ RasMol ]  
    Tyr F:12 - Leu F:13   [ RasMol ]  
    Val B:11 - Tyr B:12   [ RasMol ]  
    Val B:18 - Ala B:19   [ RasMol ]  
    Val B:437 - Lys B:438   [ RasMol ]  
    Val D:407 - Thr D:408   [ RasMol ]  
 
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  5jb1
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  Q81971_HPV59 | Q81971
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  Q81971_HPV59 | Q81971
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q81971_HPV59 | Q81971: 5j6r

(-) Related Entries Specified in the PDB File

5j6r