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(-) Description

Title :  NMR SOLUTION STRUCTURE OF [RP, RP]-PT DSDNA
 
Authors :  W. Lan, Z. Hu, C. Cao
Date :  30 Mar 16  (Deposition) - 16 Nov 16  (Release) - 16 Nov 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Dna, [Rp, Rp]-Pt Dsdna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. Lan, Z. Hu, J. Shen, C. Wang, F. Jiang, H. Liu, D. Long, M. Liu, C. Cao
Structural Investigation Into Physiological Dna Phosphorothioate Modification
Sci Rep V. 6 25737 2016
PubMed-ID: 27169778  |  Reference-DOI: 10.1038/SREP25737

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*(RSG)P*CP*CP*GP*CP*CP*GP*A)-3')
    ChainsA
    EngineeredYES
    Expression SystemSTREPTOMYCES LIVIDANS
    Expression System Taxid1916
    Organism ScientificSTREPTOMYCES LIVIDANS
    Organism Taxid1916
 
Molecule 2 - DNA (5'-D(*TP*CP*GP*GP*CP*GP*(RSG)P*CP*CP*G)-3')
    ChainsB
    EngineeredYES
    Expression SystemSTREPTOMYCES LIVIDANS
    Expression System Taxid1916
    Organism ScientificSTREPTOMYCES LIVIDANS
    Organism Taxid1916

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x)AB
NMR Structure * (1x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1GS2Mod. ResidueGUANOSINE-5'-THIO-MONOPHOSPHATE
NMR Structure * (0, 0)
No.NameCountTypeFull Name
1GS-1Mod. ResidueGUANOSINE-5'-THIO-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 5J3F)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5J3F)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J3F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J3F)

(-) Exons   (0, 0)

(no "Exon" information available for 5J3F)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:10
                                         
                  5j3f A  1 CGxCCGCCGA 10
                              |     10
                              |       
                              3-GS    

Chain B from PDB  Type:DNA  Length:10
                                         
                  5j3f B 11 TCGGCGxCCG 20
                                  | 20
                                 17-GS

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J3F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J3F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5J3F)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 5J3F)

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 Related Entries

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(-) Related Entries Specified in the PDB File

5j3g 5j3i