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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ARABIDOPSIS RECEPTOR KINASE HAESA LRR ECTDOMAIN (APO FORM).
 
Authors :  J. Santiago, M. Hothorn
Date :  23 Mar 16  (Deposition) - 20 Apr 16  (Release) - 28 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.74
Chains :  Asym./Biol. Unit :  A
Keywords :  Membrane Receptor Kinase, Peptide Hormone Receptor, Signaling Complex, Plant Development, Organ Shedding, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Santiago, B. Brandt, M. Wildhagen, U. Hohmann, L. A. Hothorn, M. A. Butenko, M. Hothorn
Mechanistic Insight Into A Peptide Hormone Signaling Comple Mediating Floral Organ Abscission.
Elife V. 5 2016
PubMed-ID: 27058169  |  Reference-DOI: 10.7554/ELIFE.15075

(-) Compounds

Molecule 1 - RECEPTOR-LIKE PROTEIN KINASE 5
    Chains: A
    EC Number: 2.7.10.1, 2.7.11.1
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Plasmid: PBAC3MOD
    Expression System Strain: BTI38
    Expression System Taxid: 7111
    Expression System Vector Type: BACUOLOVIRUS
    Fragment: ECTODOMAIN, RESIDUES 20-620
    Gene: RLK5, HAE, AT4G28490, F21O9.180
    Organ: FLOWER
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: PROTEIN HAESA
    Tissue: ABSCISSION ZONE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric/Biological Unit (3, 12)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2MG1Ligand/IonMAGNESIUM ION
3NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:457 , ILE A:458 , SER A:459 , SER A:481 , LYS A:571binding site for residue MG A 710
2AC2SOFTWAREPHE A:268 , ASP A:290binding site for residue EDO A 711
3AC3SOFTWARELYS A:32 , ASP A:37binding site for residue EDO A 712
4AC4SOFTWARESER A:74 , MET A:76 , ASN A:98binding site for Poly-Saccharide residues NAG A 701 through NAG A 702 bound to ASN A 98
5AC5SOFTWAREVAL A:78 , ASN A:102 , GLY A:103binding site for Mono-Saccharide NAG A 703 bound to ASN A 102
6AC6SOFTWAREASN A:150 , PHE A:174binding site for Poly-Saccharide residues NAG A 704 through NAG A 705 bound to ASN A 150
7AC7SOFTWARESER A:182 , ASN A:185 , GLN A:207binding site for Mono-Saccharide NAG A 706 bound to ASN A 185
8AC8SOFTWAREPHE A:245 , ASN A:246 , PHE A:268 , ASN A:269 , MET A:293 , LYS A:541binding site for Mono-Saccharide NAG A 707 bound to ASN A 269
9AC9SOFTWAREASN A:532 , SER A:555 , SER A:556 , ASN A:576 , TYR A:579binding site for Poly-Saccharide residues NAG A 708 through NAG A 709 bound to ASN A 576

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:54 -A:61
2A:86 -A:113
3A:376 -A:402
4A:606 -A:613

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IXO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IXO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IXO)

(-) Exons   (0, 0)

(no "Exon" information available for 5IXO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:596
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh.......hhhhhh....hhhhh..eee.....eeeee......ee..hhhhhhh....eee....eeeee..hhhhh......eee....eeeee...hhhhhh....eee....eee...hhhhhhh....eee..........hhhhhhh....eee...........hhhhhhh....eee......ee..hhhhhhh....eee....eeee..hhhhhhh....eee....ee....hhhhhhh....eee....................eee......ee..hhhhhhh....eee....eeeee............eee....eeee.............eee....eeee..hhhhhhh....eee....eeeee.hhhhh......eee....eeee..hhhhhhh....eee....eeee..hhhhhhh....eee....eeeee.hhhhhhh....eee....eeee.............eee....ee....hhhhhhh....eee......eee.hhhhhhh...eee....eeeee.hhhhhhhhhhhhh.....eeeee..eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ixo A  20 SLNQDATILRQAKLGLSDPAQSLSSWSDNNDVTPCKWLGVSCDATSNVVSVDLSSFMLVGPFPSILCHLPSLHSLSLYNNSINGSLSADDFDTCHNLISLDLSENLLVGSIPKSLPFNLPNLKFLEISGNNLSDTIPSSFGEFRKLESLNLAGNFLSGTIPASLGNVTTLKELKLAYNLFSPSQIPSQLGNLTELQVLWLAGCNLVGPIPPSLSRLTSLVNLDLTFNQLTGSIPSWITQLKTVEQIELFNNSFSGELPESMGNMTTLKRFDASMNKLTGKIPDNLNLLNLESLNLFENMLEGPLPESITRSKTLSELKLFNNRLTGVLPSQLGANSPLQYVDLSYNRFSGEIPANVCGEGKLEYLILIDNSFSGEISNNLGKCKSLTRVRLSNNKLSGQIPHGFWGLPRLSLLELSDNSFTGSIPKTIIGAKNLSNLRISKNRFSGSIPNEIGSLNGIIEISGAENDFSGEIPESLVKLKQLSRLDLSKNQLSGEIPRELRGWKNLNELNLANNHLSGEIPKEVGILPVLNYLDLSSNQFSGEIPLELQNLKLNVLNLSYNHLSGKIPPLYANKIYAHDFIGNPGLCVDLDGLCRK 615
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IXO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IXO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IXO)

(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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  5ixo
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  2.7.10.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RLK5_ARATH | P47735: 5ixq 5ixt 5iyv 5iyx

(-) Related Entries Specified in the PDB File

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