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(-) Description

Title :  SOLUTION STRUCTURE OF DNA DODECAMER WITH 8-OXOGUANINE AT 4TH POSITION
 
Authors :  H. L. Miears, D. R. Gruber, J. J. Hoppins, A. S. Kiryutin, R. D. Kasymov, A. V. Yurkovskaya, D. O. Zharkov, S. L. Smirnov
Date :  18 Mar 16  (Deposition) - 27 Jul 16  (Release) - 26 Oct 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (14x)
NMR Structure *:  A,B  (1x)
Keywords :  Drew-Dickerson, Dna, Dodecamer, Non-Canonical, Modified Dna, Oxidized Dna, Dna Damage, Dna Adduct, Lesion (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. J. Hoppins, D. R. Gruber, H. L. Miears, A. S. Kiryutin, R. D. Kasymov, D. V. Petrova, A. V. Endutkin, A. V. Popov, A. V. Yurkovskaya, S. O. Fedechkin, J. A. Brockerman, D. O. Zharkov, S. L. Smirnov
8-Oxoguanine Affects Dna Backbone Conformation In The Ecori Recognition Site And Inhibits Its Cleavage By The Enzyme.
Plos One V. 11 64424 2016
PubMed-ID: 27749894  |  Reference-DOI: 10.1371/JOURNAL.PONE.0164424

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*(8OG)P*AP*AP*TP*TP*CP*GP*CP*G)-3')
    ChainsA, B
    EngineeredYES
    Organism ScientificSYNTHETIC CONSTRUCT
    Organism Taxid32630
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
NMR Structure (14x)AB
NMR Structure * (1x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
18OG2Mod. Nucleotide8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
NMR Structure * (1, 2)
No.NameCountTypeFull Name
18OG2Mod. Nucleotide8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 5IV1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IV1)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IV1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IV1)

(-) Exons   (0, 0)

(no "Exon" information available for 5IV1)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  5iv1 A  1 CGCxAATTCGCG 12
                               |    10  
                               |        
                               4-8OG    

Chain B from PDB  Type:DNA  Length:12
                                           
                  5iv1 B 13 CGCxAATTCGCG 24
                               |    22  
                              16-8OG    

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IV1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IV1)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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(-) Related Entries Specified in the PDB File

5izp SOLUTION STRUCTURE OF DNA DODECAMER WITH 8-OXOGUANINE AT 10TH POSITION