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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE MERS-COV MACRO DOMAIN WITH ADP-RIBOSE
 
Authors :  J. Lei, R. Hilgenfeld
Date :  19 Jan 16  (Deposition) - 27 Jan 16  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.59
Chains :  Asym./Biol. Unit :  A
Keywords :  Complex, Non-Structural Protein, Macrodomain, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Lei, R. Hilgenfeld
Macrodomains Of Middle-East Respiratory Syndrome Coronaviru
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ORF1A
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET28A
    Expression System Taxid469008
    Expression System VariantTUNER PLACI
    Expression System Vector TypePLASMID
    FragmentX DOMAIN, RESIDUES 11109-1275
    Organism ScientificMIDDLE EAST RESPIRATORY SYNDROME CORONAVIRUS
    Organism Taxid1335626

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1APR1Ligand/IonADENOSINE-5-DIPHOSPHORIBOSE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:21 , ALA A:22 , ALA A:37 , ASN A:39 , LYS A:43 , GLY A:45 , GLY A:46 , GLY A:47 , ILE A:48 , ALA A:49 , LEU A:125 , SER A:127 , ALA A:128 , GLY A:129 , ILE A:130 , PHE A:131 , VAL A:153 , ASN A:155 , HOH A:302 , HOH A:308 , HOH A:310 , HOH A:313 , HOH A:314 , HOH A:325 , HOH A:342 , HOH A:354 , HOH A:374 , HOH A:409 , HOH A:415 , HOH A:431binding site for residue APR A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HOL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HOL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HOL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HOL)

(-) Exons   (0, 0)

(no "Exon" information available for 5HOL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh.eee....eeeee.hhhhhhhh....eeeeee........hhhhhhhhhh.hhhhhhhhhhhhhhh......eeeee......eeeeee..hhhhh.hhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhh..eeeeee.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hol A   0 MDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTIV 166
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HOL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HOL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HOL)

(-) Gene Ontology  (50, 72)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        R1AB_CVEMC | K9N7C74wur 5ko3
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(-) Related Entries Specified in the PDB File

5hih