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(-) Description

Title :  CRYSTAL STRUCTURE OF REGNASE PIN DOMAIN, FORM II
 
Authors :  M. Yokogawa, T. Tsushima, W. Adachi, N. N. Noda, F. Inagaki
Date :  29 Dec 15  (Deposition) - 16 Mar 16  (Release) - 16 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Rnase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Yokogawa, T. Tsushima, N. N. Noda, H. Kumeta, Y. Enokizono, K. Yamashita, D. M. Standley, O. Takeuchi, S. Akira, F. Inagaki
Structural Basis For The Regulation Of Enzymatic Activity O Regnase-1 By Domain-Domain Interactions
Sci Rep V. 6 22324 2016
PubMed-ID: 26927947  |  Reference-DOI: 10.1038/SREP22324

(-) Compounds

Molecule 1 - RIBONUCLEASE ZC3H12A
    ChainsA, B
    EC Number3.1.-.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentPIN DOMAIN, UNP RESIDUES 134-339
    GeneZC3H12A, MCPIP, MCPIP1
    Organism CommonMOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    SynonymREGNASE-1,MCP-INDUCED PROTEIN 1,ZINC FINGER CCCH DOMAIN- CONTAINING PROTEIN 12A

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1NA2Ligand/IonSODIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:146 , MET A:147 , HIS A:149 , ASN A:151 , VAL A:154binding site for residue NA A 401
2AC2SOFTWAREALA B:146 , MET B:147 , HIS B:149 , ASN B:151 , VAL B:154binding site for residue NA B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5H9W)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5H9W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5H9W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5H9W)

(-) Exons   (0, 0)

(no "Exon" information available for 5H9W)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeehhhhhhhh.....eehhhhhhhhhhhhhh....eeeeee.hhhh.......ee..hhhhhhhhh..eeee.eeee..eeee.hhhhhhhhhhhhhh.eee....hhhhhhhhhhhhhhhhhhee..eee..eee...........hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5h9w A 134 DLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAFESDGVVVSNDTYRDLQGERQEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKK 295
                                   143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293  

Chain B from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeehhhhhhhh.....eehhhhhhhhhhhhhhh...eeeeee.hhhh.......ee..hhhhhhhhh..eeee.eeee..eeee.hhhhhhhhhhhhhh.eee....hhhhhhhhhhhhhhhhhhee..eee..eee...........hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5h9w B 134 DLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAFESDGVVVSNDTYRDLQGERQEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKK 295
                                   143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293  

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5H9W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5H9W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5H9W)

(-) Gene Ontology  (91, 91)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ZC12A_MOUSE | Q5D1E72n5j 2n5k 2n5l 5h9v

(-) Related Entries Specified in the PDB File

5h9v