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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN SYNAPTOTAGMIN 5 C2A DOMAIN
 
Authors :  X. Qiu, Y. Gao, M. Teng, L. Niu
Date :  02 Nov 16  (Deposition) - 30 Nov 16  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  X. Qiu, J. Ge, Y. Gao, M. Teng, L. Niu
Structural Analysis Of Ca(2+)-Binding Pocket Of Synaptotagmin 5 C2A Domain
Int. J. Biol. Macromol. V. 95 946 2017
PubMed-ID: 27793683  |  Reference-DOI: 10.1016/J.IJBIOMAC.2016.10.083

(-) Compounds

Molecule 1 - SYNAPTOTAGMIN-5
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidP28
    Expression System StrainK12
    Expression System Taxid562
    FragmentUNP RESIDUES 102-242
    GeneSYT5
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymSYNAPTOTAGMIN V,SYTV

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CA3Ligand/IonCALCIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:139 , ASP A:145 , ASP A:197 , PHE A:198 , ASP A:199 , HOH A:448binding site for residue CA A 301
2AC2SOFTWARELEU A:138 , ASP A:139 , ASP A:197 , ASP A:199 , ASP A:205 , HOH A:504binding site for residue CA A 302
3AC3SOFTWAREASP A:199 , SER A:202 , ARG A:203 , ASP A:205 , HOH A:495 , HOH A:505binding site for residue CA A 303
4AC4SOFTWAREASP A:199 , ARG A:200 , PHE A:201 , HOH A:413 , HOH A:415 , HOH A:448binding site for residue ACT A 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5H4Y)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:153 -Pro A:154

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5H4Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5H4Y)

(-) Exons   (0, 0)

(no "Exon" information available for 5H4Y)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:127
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee....eeeeeeeeee............eeeeeeee.....eee..........eeeeeeeee.hhhhhhh.eeeeeeee.......eeeeeeeee.hhh.....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h4y A 107 HELGQLQYSLDYDFQSGQLLVGILQAMGLAALDLGGSSDPYVRVYLLPDKRRRYETKVHRQTLNPHFGETFAFKVPYVELGGRVLVMAVYDFDRFSRNDAIGEVRVPMSSVDLGRPVQAWRELQAAP 233
                                   116       126       136       146       156       166       176       186       196       206       216       226       

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5H4Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5H4Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5H4Y)

(-) Gene Ontology  (25, 25)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SYT5_HUMAN | O004455h4z

(-) Related Entries Specified in the PDB File

5h4z