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(-) Description

Title :  NOVEL INHIBITORS OF HUMAN RHINOVIRUS 3C PROTEASE
 
Authors :  S. Kawatkar, M. Ek, V. Hoesch, M. Gagnon, E. Nilsson, T. Lister, L. Olsso J. Patel, Q. Yu
Date :  24 Feb 16  (Deposition) - 22 Jun 16  (Release) - 22 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. P. Kawatkar, M. Gagnon, V. Hoesch, C. Tiong-Yip, K. Johnson, M. Ek, E. Nilsson, T. Lister, L. Olsson, J. Patel, Q. Yu
Design And Structure-Activity Relationships Of Novel Inhibitors Of Human Rhinovirus 3C Protease.
Bioorg. Med. Chem. Lett. V. 26 3248 2016
PubMed-ID: 27265257  |  Reference-DOI: 10.1016/J.BMCL.2016.05.066

(-) Compounds

Molecule 1 - RHINOVIRUS 3C PROTEASE
    Chains: A
    EC Number: 2.4.22.28
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Fragment: 3C PROTEASE, RESIDUES 1508-1687
    Organism Common: HRV2
    Organism Scientific: HUMAN RHINOVIRUS 2
    Organism Taxid: 12130

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2HOV1Ligand/IonETHYL (4R)-4-[[(2S,3R)-1-[(2S)-3-METHYL-2-[(5-METHYL-1,2-OXAZOL-3-YL)CARBONYLAMINO]BUTANOYL]-3-PHENYL-PYRROLIDIN-2-YL]CARBONYLAMINO]-5-[(3S)-2-OXIDANYLIDENEPYRROLIDIN-3-YL]PENTANOATE
3PG41Ligand/IonTETRAETHYLENE GLYCOL
4PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:63 , SER A:177 , HOH A:2084BINDING SITE FOR RESIDUE GOL A1181
2AC2SOFTWARELYS A:69 , ASN A:130 , HOH A:2168 , HOH A:2178BINDING SITE FOR RESIDUE GOL A1182
3AC3SOFTWAREGLU A:46 , GLN A:48 , THR A:53 , SER A:121 , TYR A:122 , GLY A:123BINDING SITE FOR RESIDUE PG4 A1183
4AC4SOFTWARETYR A:31BINDING SITE FOR RESIDUE PGE A1184
5AC5SOFTWAREASN A:22 , LYS A:24 , PHE A:25 , HIS A:40 , GLU A:71 , LEU A:126 , LEU A:127 , SER A:128 , THR A:142 , LYS A:143 , GLY A:145 , TYR A:146 , CYS A:147 , HIS A:161 , VAL A:162 , GLY A:163 , GLY A:164 , ASN A:165 , PHE A:170 , HOH A:2162 , HOH A:2181BINDING SITE FOR RESIDUE HOV A1185

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FX5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FX5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FX5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FX5)

(-) Exons   (0, 0)

(no "Exon" information available for 5FX5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhheeeeee..eeeeeeeee..eeeee.hhh...eeee..eeeeeeeeeeee.....eeeeeeeee........hhhhh......eeeeeeee.......eeeeeeeeeeeeeeee..eeeeeeeee...........eeee..eeeeeeeee....eeeee.hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5fx5 A   1 GPEEEFGMSLIKHNSCVITTENGKFTGLGVYDRFVVVPTHADPGKEIQVDGITTKVIDSYDLYNKNGIKLEITVLKLDRNEKFRDIRRYIPNNEDDYPNCNLALLANQPEPTIINVGDVVSYGNILLSGNQTARMLKYSYPTKSGYCGGVLYKIGQVLGIHVGGNGRDGFSAMLLRSYFT 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FX5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FX5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FX5)

(-) Gene Ontology  (49, 49)

Asymmetric/Biological Unit(hide GO term definitions)

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  POLG_HRV2 | P04936
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLG_HRV2 | P04936: 1a3r 1cqq 1fpn 1v9u 2hrv 2xya 3dpr 3tn9 3vdd 4l3b 5fx6

(-) Related Entries Specified in the PDB File

5fx6 NOVEL INHIBITORS OF HUMAN RHINOVIRUS 3C PROTEASE