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(-) Description

Title :  HIGH RESOLUTION NI,FE-CODH-320 MV WITH CN STATE
 
Authors :  A. Ciaccafava, D. Tombolelli, L. Domnik, J. Fesseler, J. -H. Jeoung, H. M. A. Mroginski, P. Hildebrandt, I. Zebger
Date :  26 Oct 15  (Deposition) - 14 Sep 16  (Release) - 14 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.23
Chains :  Asym. Unit :  X
Biol. Unit 1:  X  (2x)
Keywords :  Oxidoreductase, Carbon Monoxide, Nickel, Iron, Carbon Monoxide Dehydrogenase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ciaccafava, D. Tombolelli, L. Domnik, J. Fesseler, J. -H. Jeoung, H. Dobbek, M. A. Mroginski, I. Zebger, P. Hildebrandt
When The Inhibitor Tells More Than The Substrate: The Cyanide-Bound State Of A Carbon Monoxide Dehydrogenase.
Chem. Sci. V. 7 3162 2016
PubMed: search  |  Reference-DOI: 10.1039/C5SC04554A

(-) Compounds

Molecule 1 - CARBON MONOXIDE DEHYDROGENASE 2
    Chains: X
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: CARBOXYDOTHERMUS HYDROGENOFORMANS
    Organism Taxid: 246194
    Strain: Z-2901
    Synonym: CODH 2

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : X
Biological Unit 1 (2x): X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric Unit (4, 4)
No.NameCountTypeFull Name
182N1Ligand/IonNICKEL IRON CLSUTER WITH CYANIDE BOUND
2FE21Ligand/IonFE (II) ION
3FES1Ligand/IonFE2/S2 (INORGANIC) CLUSTER
4SF41Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 1 (4, 8)
No.NameCountTypeFull Name
182N2Ligand/IonNICKEL IRON CLSUTER WITH CYANIDE BOUND
2FE22Ligand/IonFE (II) ION
3FES2Ligand/IonFE2/S2 (INORGANIC) CLUSTER
4SF42Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS X:48 , CYS X:51 , GLY X:54 , CYS X:56 , CYS X:70 , ARG X:80 , MET X:199BINDING SITE FOR RESIDUE SF4 X1001
2AC2SOFTWARECYS X:39 , GLY X:42 , CYS X:47BINDING SITE FOR RESIDUE FES X1002
3AC3SOFTWAREHIS X:93 , HIS X:261 , SER X:312 , CYS X:333 , GLY X:445 , CYS X:446 , CYS X:476 , CYS X:526 , MET X:560 , HIS X:561 , LYS X:563 , FE2 X:1004BINDING SITE FOR RESIDUE 82N X1003
4AC4SOFTWAREHIS X:261 , CYS X:295 , CYS X:526 , 82N X:1003BINDING SITE FOR RESIDUE FE2 X1004

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FLE)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Lys X:36 -Pro X:37
2Gly X:54 -Pro X:55
3Glu X:64 -Pro X:65

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FLE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FLE)

(-) Exons   (0, 0)

(no "Exon" information available for 5FLE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain X from PDB  Type:PROTEIN  Length:633
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhh.ee.......ee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.......hhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeehhhhh....eeeeeee....hhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhh..eeehhhhhhhhhhh..eeeeee.......hhhhhhhhhh.eeee..........ee...hhhhhhhhhhhhhhhhhhhhhhh...........eeeee..hhhhhhhhhhh.....hhhhhhhhhhh.....eeee..........hhhhhhhhhhhhhh..eeeeehhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh........eeeee...hhhhhhhhhhhhhhhhh.hhhhh.eeeee....hhhhhhhhhhhhhhh.eeee........hhhhhhhhhh.hhhhhh.eeee..hhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fle X   4 QNLKSTDRAVQQMLDKAKREGIQTVWDRYEAMKPQCGFGETGLCCRHCLQGPCRINPFGDEPKVGICGATAEVIVARGLDRSIAAGAAGHSGHAKHLAHTLKKAVQGKAASYMIKDRTKLHSIAKRLGIPTEGQKDEDIALEVAKAALADFHEKDTPVLWVTTVLPPSRVKVLSAHGLIPAGIDHEIAEIMHRTSMGCDADAQNLLLGGLRCSLADLAGCYMGTDLADILFGTPAPVVTESNLGVLKADAVNVAVHGHNPVLSDIIVSVSKEMENEARAAGATGINVVGICCTGNEVLMRHGIPACTHSVSQEMAMITGALDAMILDYQCIQPSVATIAECTGTTVITTMEMSKITGATHVNFAEEAAVENAKQILRLAIDTFKRRKGKPVEIPNIKTKVVAGFSTEAIINALSKLNANDPLKPLIDNVVNGNIRGVCLFAGCNNVKVPQDQNFTTIARKLLKQNVLVVATGCGAGALMRHGFMDPANVDELCGDGLKAVLTAIGEANGLGGPLPPVLHMGSCVDNSRAVALVAALANRLGVDLDRLPVVASAAEAMHEKAVAIGTWAVTIGLPTHIGVLPPITGSLPVTQILTSSVKDITGGYFIVELDPETAADKLLAAINERRAGLGLPW 636
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FLE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FLE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FLE)

(-) Gene Ontology  (13, 13)

Asymmetric Unit(hide GO term definitions)

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  5fle
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  COOS2_CARHZ | Q9F8A8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COOS2_CARHZ | Q9F8A8: 1su6 1su7 1su8 1suf 2yiv 3b51 3b52 3b53 3i39 4udx 4udy

(-) Related Entries Specified in the PDB File

5flh FREE STATE OF NI-QUERCETINASE
5fli ENZYME-SUBSTRATE COMPLEX OF NI-QUERCETINASE
5flj ENZYME-SUBSTRATE-DIOXYGEN COMPLEX OF NI-QUERCETINASE