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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PRP38-MFAP1 COMPLEX OF CHAETOMIUM THERMOPHILUM
 
Authors :  A. K. C. Ulrich, M. C. Wahl
Date :  04 Dec 15  (Deposition) - 12 Oct 16  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  B-Specific Protein, Pre-Mrna Splicing, Sah, Transcription, Splicing (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. C. Ulrich, M. Seeger, T. Schuetze, N. Bartlick, M. C. Wahl
Crystal Structure Of The Prp38-Mfap1 Complex Of Homo Sapien
Structure 2016
PubMed: search  |  Reference-DOI: 10.1016/J.STR.2016.09.007

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PETM11
    Expression System Taxid: 469008
    Expression System Variant: RIL
    Expression System Vector Type: PLASMID
    Fragment: NTR
    Gene: CTHT_0013190
    Organism Scientific: CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS 144.50 / IMI 039719)
    Organism Taxid: 759272
    Strain: DSM 1495 / CBS 144.50 / IMI 039719
 
Molecule 2 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PETM11
    Expression System Taxid: 469008
    Expression System Variant: RIL
    Expression System Vector Type: PLASMID
    Gene: CTHT_0069660
    Organism Scientific: CHAETOMIUM THERMOPHILUM
    Organism Taxid: 759272
    Strain: DSM 1495 / CBS 144.50 / IMI 039719

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5F5T)

(-) Sites  (0, 0)

(no "Site" information available for 5F5T)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F5T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5F5T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F5T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F5T)

(-) Exons   (0, 0)

(no "Exon" information available for 5F5T)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh............hhhhh.hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....ee....eehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....eeeeehhhhhhhhhhh.ee..ee.....hhhhhhhh...........hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f5t A   4 PDTHRADERRFLDERGSSGPLAPNGLNPATIMEKAVRERIVESYFWKEQCFGVNEADIVDRVVEHVRFVGGVTGVTQKPSPFLCLAFKLLQLAPGDDILKEYLYFGGEKFKYLRALAAFYIRLTRPDKEVYTLLEPFLEDRRKLRRKGKNGTSLTYMDEFIDDLLTKDRVCSTSLWKMRRRDILEDLDLLEPRVSPLGSLEDILEEEEQAAKNED 218
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213     


Chain B from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh........hhhhh.hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....ee....eehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....eeeeehhhhhhhhhhh.ee..ee.....hhhhhhhh...........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f5t B   4 PDTHRADERRFLDERGSSGPLAPNGLNPATIMEKAVRERIVESYFWKEQCFGVNEADIVDRVVEHVRFVGGVTGVTQKPSPFLCLAFKLLQLAPGDDILKEYLYFGGEKFKYLRALAAFYIRLTRPDKEVYTLLEPFLEDRRKLRRKGKNGTSLTYMDEFIDDLLTKDRVCSTSLWKMRRRDILEDLDLLEPRVSPLGSLEDILEEEEQAAKNE 217
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213    


Chain C from PDB  Type:PROTEIN  Length:64
                                                                                                
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 5f5t C 215 MGTTDDVDPEAEYAAWKLRELRRLRRERDAIEARERELAELERRRNLTEEERRAEDEAHLAKQK 278
                                   224       234       244       254       264       274    


Chain D from PDB  Type:PROTEIN  Length:44
                                                                            
               SCOP domains -------------------------------------------- SCOP domains
               CATH domains -------------------------------------------- CATH domains
               Pfam domains -------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------- PROSITE
                 Transcript -------------------------------------------- Transcript
                 5f5t D 216 GTTDDVDPEAEYAAWKLRELRRLRRERDAIEARERELAELERRR 259
                                   225       235       245       255
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F5T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F5T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F5T)

(-) Gene Ontology  (1, 1)

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 Related Entries

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        G0S1D3_CHATD | G0S1D3: 5f5u 5f5v
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