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(-) Description

Title :  CRYSTAL STRUCTURE OF MARBURG VIRUS NUCLEOPROTEIN CORE DOMAIN
 
Authors :  Y. Guo, B. C. Liu, X. Liu, G. B. Li, W. M. Wang, S. S. Dong, W. J. Wang
Date :  04 Dec 15  (Deposition) - 31 May 17  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Filovirus, Marburg Virus, Nucleocapsid, Nucleoprotein, Nuclear Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. C. Liu, S. S. Dong, G. B. Li, W. M. Wang, X. Liu, Y. T. Wang, C. Yang, Z. H. Rao, Y. Guo
Structural Insight Into Nucleoprotein Conformation Change Chaperoned By Vp35 Peptide In Marburg Virus
J. Virol. 2017
PubMed-ID: 28566377  |  Reference-DOI: 10.1128/JVI.00825-17

(-) Compounds

Molecule 1 - NUCLEOPROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 19-370
    Gene: NP
    Organism Common: MARV, MARBURG VIRUS (STRAIN SOUTH AFRICA/OZOLIN/1975)
    Organism Scientific: LAKE VICTORIA MARBURGVIRUS (STRAIN OZOLIN-75)
    Organism Taxid: 482820
    Strain: OZOLIN-75
    Synonym: NUCLEOCAPSID PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5F5M)

(-) Sites  (0, 0)

(no "Site" information available for 5F5M)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F5M)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asp A:241 -Ser A:242

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F5M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F5M)

(-) Exons   (0, 0)

(no "Exon" information available for 5F5M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:341
                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhh.....hhhhhhhhh.......hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhheeee..eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f5m A  21 KKVILFDTNHQVSICNQIIDAINSGIDLGDLLEGGLLTLCVEHYYNSDKDKFNTSPIAKYLRDAGYEFDVIKNADATRFLDVIPNEPHYSPLILALKTLSTESQRGRIGLFLSFCSLFLPKLVVGDRASIEKALRQVTVHQEQGIVTYPNHWLTTGHMKVIFGILRSSFILKFVLIHQGVNLVTHDAYDSIISNSVGQTRFSGLLIVKTVLEFILQKTDSGVTLHPLVRTSKVKNEVASFKQALSNLARHGEYAPFARVLNLSGINNLEHGLYPQLSAIALGVATAHGSTLVNEQYQQLREAAHDAEVKLQRRHEHQEIQAIAEDDEERKILEQFHLQKTE 367
                                    30        40        50        60        70        80        90       100       110       121       131       141       151       161       171       181       191       201   ||  212       222       232       242       252       262       272       282       292       302       312||||   326       336       346       356       366 
                                                                                                                            119|                                                                                 205|                                                                                                       313|||                                               
                                                                                                                             121                                                                                  207                                                                                                        316||                                               
                                                                                                                                                                                                                                                                                                                              317|                                               
                                                                                                                                                                                                                                                                                                                               320                                               


Chain B from PDB  Type:PROTEIN  Length:334
                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhh.....hhhhhhh.......hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhhhhhhhh.....hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f5m B  21 KKVILFDTNHQVSICNQIIDAINSGIDLGDLLEGGLLTLCVEHYYNSDKDKFNTSPIAKYLRDAGYEFDVIKNADATRFLDVIPNEPYSPLILALKTSTESQRGRIGLFLSFCSLFLPKLVVGDRASIEKALRQVTVHQEQGIVTYPNHWLTTGHMKVIFGILRSSFILKFVLIHQGVNLGHDAYDSIISNSVGQTRFSGLLIVKTVLEFILQVTLHPLVRTSVKNEVASFKQALSNLARHGEYAPFARVLNLSGINNLEHGLYPQLSAIALGVATAHGSNVGEQYQQLREAAHDAEVKLQRRHEHQEIQAIAEDDEERKILEQFHLQKTEITH 370
                                    30        40        50        60        70        80        90       100      |111      |123       133       143       153       163       173       183       193       203|      215       225       235  ||   250  ||   261       271       281       291       301       311|      326       336       346       356       366    
                                                                                                                107|      118|                                                                               203|                             238|      253|                                                     311|                                                     
                                                                                                                 109       121                                                                                206                              244       255                                                      317
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F5M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F5M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F5M)

(-) Gene Ontology  (11, 11)

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  Cis Peptide Bonds
    Asp A:241 - Ser A:242   [ RasMol ]  
 
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 Related Entries

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UniProtKB/Swiss-Prot
        NCAP_MABVO | Q6UY69: 5f5o 5xsq

(-) Related Entries Specified in the PDB File

5f5o