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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN WDR5 IN COMPLEX WITH COMPOUND 9E
 
Authors :  A. Dong, L. Dombrovski, D. Smil, M. Getlik, Y. Bolshan, J. R. Walker, G. Senisterra, G. Poda, R. Al-Awar, M. Schapira, M. Vedadi, C. Bountra A. M. Edwards, C. H. Arrowsmith, P. J. Brown, H. Wu, Structural Genomi Consortium (Sgc)
Date :  16 Oct 15  (Deposition) - 04 Nov 15  (Release) - 24 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.73
Chains :  Asym./Biol. Unit :  A
Keywords :  Wdr5, Compound 9E, Structural Genomics, Structural Genomics Consortium, Sgc, Transcription-Transcription Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Dombrovski, A. Dong, D. Smil, M. Getlik, Y. Bolshan, J. R. Walker, G. Senisterra, G. Poda, R. Al-Awar, M. Schapira, M. Vedadi, C. Bountra A. M. Edwards, C. H. Arrowsmith, P. J. Brown, H. Wu, Structural Genomics Consortium (Sgc)
Crystal Structure Of Human Wdr5 In Complex With Compound 9E
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - WD REPEAT-CONTAINING PROTEIN 5
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28-MHL
    Expression System Strain: BL21(DE3)V2RPRARE
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 23-334
    Gene: WDR5, BIG3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BMP2-INDUCED 3-KB GENE PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 22)

Asymmetric/Biological Unit (5, 22)
No.NameCountTypeFull Name
15MO1Ligand/IonN-[5-(2,3-DIHYDRO-1-BENZOFURAN-5-YL)-2-(4-METHYLPIPERAZIN-1-YL)PHENYL]-3-METHYLBENZAMIDE
2CL1Ligand/IonCHLORIDE ION
3EDO5Ligand/Ion1,2-ETHANEDIOL
4GOL1Ligand/IonGLYCEROL
5UNX14Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:49 , SER A:50 , ALA A:65 , ILE A:90 , SER A:91 , PHE A:133 , PHE A:149 , SER A:175 , TYR A:191 , CYS A:261 , ILE A:305 , GOL A:402 , EDO A:407 , HOH A:510 , HOH A:522binding site for residue 5MO A 401
2AC2SOFTWAREASP A:107 , 5MO A:401 , EDO A:407binding site for residue GOL A 402
3AC3SOFTWARELYS A:221 , PHE A:263binding site for residue CL A 403
4AC4SOFTWARESER A:26 , ALA A:42 , GLY A:43 , LYS A:70 , PHE A:79binding site for residue EDO A 404
5AC5SOFTWARETRP A:59 , GLU A:80 , LYS A:81 , VAL A:116binding site for residue EDO A 405
6AC6SOFTWAREASP A:107 , SER A:171 , ASP A:192 , ARG A:196 , HOH A:511binding site for residue EDO A 406
7AC7SOFTWARELYS A:259 , TYR A:260 , CYS A:261 , 5MO A:401 , GOL A:402 , HOH A:522binding site for residue EDO A 407
8AC8SOFTWAREPHE A:266 , SER A:267 , VAL A:268 , THR A:269 , HIS A:310 , HOH A:525binding site for residue EDO A 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EAP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EAP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EAP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EAP)

(-) Exons   (0, 0)

(no "Exon" information available for 5EAP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:310
                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee......eeeeee.....eeeeee....eeeee.....eeeee......eeeeee.....eeeeee....eeeee.....eeeee......eeeeee.....eeeeee....eeeee.....eeeee......eeeeee.....eeeeee....eeeee.....eeeee.....eeeeee......eeeee...eeeeee....eeeeee...........eeee.....eeee......eeeee.....eeeee......eeeeee.....eeeeee......eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eap A  23 GTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 334
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       214       224       234       244       254       264       274       284       294       304       314       324       334
                                                                                                                                                                                                                      211|                                                                                                                        
                                                                                                                                                                                                                       214
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EAP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EAP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EAP)

(-) Gene Ontology  (26, 26)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        WDR5_HUMAN | P61964: 2cnx 2co0 2g99 2g9a 2gnq 2h13 2h14 2h68 2h6k 2h6n 2h6q 2h9l 2h9m 2h9n 2h9p 2o9k 3eg6 3emh 3mxx 3n0d 3n0e 3p4f 3psl 3smr 3ur4 3uvk 3uvl 3uvm 3uvn 3uvo 4a7j 4cy1 4cy2 4erq 4ery 4erz 4es0 4esg 4ewr 4gm3 4gm8 4gm9 4gmb 4ia9 4o45 4ql1 4qqe 4y7r 5eal 5eam 5ear 5m23 5m25 5sxm 5vfc

(-) Related Entries Specified in the PDB File

5eal 5eam 5ear