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Title :   CRYSTAL STRUCTURE OF HUMAN WDR5 IN COMPLEX WITH COMPOUND 9O

Authors :   A. Dong, L. Dombrovski, D. Smil, M. Getlik, Y. Bolshan, J. R. Walker, G. Senisterra, G. Poda, R. Al-Awar, M. Schapira, M. Vedadi, C. Bountra A. M. Edwards, C. H. Arrowsmith, P. J. Brown, H. Wu, Structural Genomi Consortium (Sgc)

Date :   16 Oct 15 (Deposition) - 04 Nov 15 (Release) - 04 Nov 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Wdr5, Compound 9O, Structural Genomics, Structural Genomics Consortium, Sgc, Transcription-Transcription Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Dombrovski, A. Dong, D. Smil, M. Getlik, Y. Bolshan, J. R. Walker, G. Senisterra, G. Poda, R. Al-Awar, M. Schapira, M. Vedadi, C. Bountra A. M. Edwards, C. H. Arrowsmith, P. J. Brown, H. Wu, Structural Genomics Consortium (Sgc)
Crystal Structure Of Human Wdr5 In Complex With Compound 9O
To Be Published
PubMed: search

Molecule 1 - WD REPEAT-CONTAINING PROTEIN 5
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28-MHL
	Expression System Strain	:	BL21(DE3)V2RPRARE
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 23-334
	Gene	:	WDR5, BIG3
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	BMP2-INDUCED 3-KB GENE PROTEIN

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 34)

No.	Name	Count	Type	Full Name
1	5MN	2	Ligand/Ion	~{N}-[5-(1~{H}-INDOL-5-YL)-2-(4-METHYLPIPERAZIN-1-YL)PHENYL]-3-METHYL-BENZAMIDE
2	BTB	1	Ligand/Ion	2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
3	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
4	SO4	1	Ligand/Ion	SULFATE ION
5	UNX	25	Ligand/Ion	UNKNOWN ATOM OR ION

Biological Unit 1 (3, 13)

No.	Name	Count	Type	Full Name
1	5MN	1	Ligand/Ion	~{N}-[5-(1~{H}-INDOL-5-YL)-2-(4-METHYLPIPERAZIN-1-YL)PHENYL]-3-METHYL-BENZAMIDE
2	BTB	-1	Ligand/Ion	2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
3	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
4	SO4	-1	Ligand/Ion	SULFATE ION
5	UNX	11	Ligand/Ion	UNKNOWN ATOM OR ION

Biological Unit 2 (5, 21)

No.	Name	Count	Type	Full Name
1	5MN	1	Ligand/Ion	~{N}-[5-(1~{H}-INDOL-5-YL)-2-(4-METHYLPIPERAZIN-1-YL)PHENYL]-3-METHYL-BENZAMIDE
2	BTB	1	Ligand/Ion	2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
3	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
4	SO4	1	Ligand/Ion	SULFATE ION
5	UNX	14	Ligand/Ion	UNKNOWN ATOM OR ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:49 , SER A:50 , ALA A:65 , ILE A:90 , SER A:91 , ASP A:92 , PHE A:133 , SER A:175 , TYR A:191 , CYS A:261 , HOH A:546 , HOH A:556	binding site for residue 5MN A 401
2	AC2	SOFTWARE	PRO A:55 , TRP A:95 , SER A:96 , SER A:97 , ASN A:138 , HOH A:519 , HOH A:563	binding site for residue EDO A 402
3	AC3	SOFTWARE	SER B:49 , SER B:50 , ALA B:65 , ILE B:90 , SER B:91 , PHE B:133 , PHE B:149 , SER B:175 , TYR B:191 , CYS B:261 , ILE B:305 , HOH B:505 , HOH B:518	binding site for residue 5MN B 401
4	AC4	SOFTWARE	HIS B:178 , LYS B:221 , BTB B:403 , EDO B:404 , EDO B:405 , HOH B:519 , HOH B:571 , HOH B:591	binding site for residue SO4 B 402
5	AC5	SOFTWARE	ASP A:76 , LYS A:78 , PRO B:55 , TRP B:95 , SER B:96 , SER B:97 , ASN B:136 , PHE B:137 , PRO B:139 , SO4 B:402 , EDO B:404 , EDO B:405 , HOH B:508 , HOH B:512 , HOH B:516 , HOH B:568	binding site for residue BTB B 403
6	AC6	SOFTWARE	PHE B:53 , ALA B:94 , TRP B:95 , SO4 B:402 , BTB B:403 , HOH B:501 , HOH B:531	binding site for residue EDO B 404
7	AC7	SOFTWARE	HIS B:178 , PHE B:179 , ASN B:180 , ARG B:181 , PHE B:222 , SER B:223 , PRO B:224 , SO4 B:402 , BTB B:403 , HOH B:512	binding site for residue EDO B 405
8	AC8	SOFTWARE	PHE B:266 , SER B:267 , VAL B:268 , THR B:269 , HOH B:526 , HOH B:571	binding site for residue EDO B 406
9	AC9	SOFTWARE	LEU B:164 , LYS B:165 , THR B:200 , ALA B:201 , HOH B:570	binding site for residue EDO B 407

(no "SS Bond" information available for 5EAM)

(no "Cis Peptide Bond" information available for 5EAM)

(no "SAP(SNP)/Variant" information available for 5EAM)

(no "PROSITE Motif" information available for 5EAM)

(no "Exon" information available for 5EAM)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee......eeeeee.....eeeeee...eeeeee.....eeeeee.....eeeeee.....eeeeee...eeeeee.....eeeeee.....eeeeee.....eeeeee....eeeee.....eeeee......eeeeee.....eeeeee....eeeee.....eeeee.......eeeeee......eeeee...eeeeee....eeeeeee..........eeee.....eeee......eeeee.....eeeee......eeeeee.....eeeeee......eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eam A  31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 334
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330

Chain B from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee......eeeeee.....eeeeee....eeeee.....eeeee......eeeeee.....eeeeee...eeeeee.....eeeeee.....eeeeee.....eeeeee....eeeee.....eeeee......eeeeee.....eeeeee....eeeee.....eeeee.......eeeeee......eeeee...eeeeee....eeeeee...........eeee.....eeeee.....eeeee.....eeeee......eeeeee.....eeeeee......eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eam B  31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 334
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5EAM)

(no "CATH Domain" information available for 5EAM)

(no "Pfam Domain" information available for 5EAM)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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Description

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Ligands, Modified Residues, Ions (5, 34)

Sites (9, 9)

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