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Title :   CONTEXT-INDEPENDENT ANTI-HYPUSINE ANTIBODY FABHPU98.61 IN COMPLEX WITH HYPUSINE

Authors :   Q. Zhai, P. J. Carter

Date :   18 Sep 15 (Deposition) - 17 Feb 16 (Release) - 04 May 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,H,L,P
Biol. Unit 1: H,L,P  (1x)
Biol. Unit 2: A,B  (1x)

Keywords :   Hypusine, Antibody, Fabhpu98. 61, Eif5A, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Q. Zhai, M. He, A. Song, K. Deshayes, V. M. Dixit, P. J. Carter
Structural Analysis And Optimization Of Context-Independent Anti-Hypusine Antibodies.
J. Mol. Biol. V. 428 603 2016
PubMed-ID: 26778617 | Reference-DOI: 10.1016/J.JMB.2016.01.006

Molecule 1 - FAB HPU98.61 HEAVY CHAIN
	Chains	:	H, A
	Engineered	:	YES
	Expression System	:	CRICETULUS GRISEUS
	Expression System Common	:	CHINESE HAMSTER
	Expression System Taxid	:	10029
	Organism Scientific	:	ORYCTOLAGUS CUNICULUS
	Organism Taxid	:	9986

Molecule 2 - FAB HPU98.61 LIGHT CHAIN
	Chains	:	L, B
	Engineered	:	YES
	Expression System	:	CRICETULUS GRISEUS
	Expression System Common	:	CHINESE HAMSTER
	Expression System Taxid	:	10029
	Organism Scientific	:	ORYCTOLAGUS CUNICULUS
	Organism Taxid	:	9986

Molecule 3
	Chains	:	P
	Engineered	:	YES
	Organism Scientific	:	SYNTHETIC CONSTRUCT
	Organism Taxid	:	32630
	Synthetic	:	YES

		1	2	3	4	5
Asymmetric Unit	:	A	B	H	L	P
Biological Unit 1 (1x)	:			H	L	P
Biological Unit 2 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 4)

No.	Name	Count	Type	Full Name
1	5CT	2	Mod. Amino Acid	HYPUSINE
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	5CT	1	Mod. Amino Acid	HYPUSINE
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	5CT	1	Mod. Amino Acid	HYPUSINE
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS H:43 , TYR L:87	binding site for residue EDO L 301
2	AC2	SOFTWARE	LYS A:43 , TYR B:87 , HOH B:405	binding site for residue EDO B 302

Asymmetric Unit

No.	Residues
1	A:22	-	A:92
2	A:27	-	A:32
3	A:127	-	B:211
4	A:140	-	A:193
5	B:23	-	B:88
6	B:80	-	B:170
7	B:134	-	B:193
8	H:22	-	H:92
9	H:27	-	H:32
10	L:23	-	L:88
11	L:80	-	L:170
12	L:134	-	L:193

Asymmetric Unit

No.	Residues
1	Leu H:146	-	Pro H:147
2	Glu H:148	-	Pro H:149
3	Thr L:7	-	Pro L:8
4	Phe L:140	-	Pro L:141
5	Leu A:146	-	Pro A:147
6	Glu A:148	-	Pro A:149
7	Thr B:7	-	Pro B:8
8	Phe B:140	-	Pro B:141

(no "SAP(SNP)/Variant" information available for 5DTF)

(no "PROSITE Motif" information available for 5DTF)

(no "Exon" information available for 5DTF)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.....eeee..........eeeeeeee.....eeeeeeee....eee.hhhh..eeeeee..eeeeee...hhhhheeeeeeeee..........ee...eeeee........eeeee.....eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.....eeeeeeehhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5dtf A    5 EESGGRLVTPGTPLTLTCTVSACSLYHCTMNWVRQAPGKGLEWIGDIYTDGNTYYANWAKGRFTISKTSTTVDLKITSPTTEDTATYFCARDSWDASSYYGLDLWGQGTLVTVSSGQPKGPSVFPLAPCSSTVTLGCLVKGYLPEPVTVTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSSSQPVTCNVAHPATNTKVDKTVAP  210
                                    14        24        34        44        54        64        74        83        93      100C||     108       118       133       143       153       163       173       183       193       203       
                                                                                                        82A               100A||||                        127|                                                                             
                                                                                                                           100B|||                         133                                                                             
                                                                                                                            100C||                                                                                                         
                                                                                                                             100D|                                                                                                         
                                                                                                                              100E

Chain B from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee...eeeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeeee..hhhhheeeeeee..............eeeeee......eeeee.....hhhh.eeeeeeeeeee....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhh..eeeeeeee..eeeeeeee.hhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5dtf B    1 AIKMTQTPSSVSAAVGGTVTINCQASEDIKRYLAWYQQKPGQPPKLLIYAASKLASGVSSRFKGSGSGTEYTLTISGVQCDDAATYYCQQGYTSSNVNNAFGGGTEVVVKGDPVAPTVLIFPPAADQVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTQYNSHKEYTCKVTQGTTSVVQSFNRGDC  211
                                    10        20        30        40        50        60        70        80        90     |||97       107       117       127       137       147       157       167       177       187       197       207    
                                                                                                                         95A||                                                                                                                    
                                                                                                                          95B|                                                                                                                    
                                                                                                                           95C

Chain H from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.....eeee..........eeeeeeee.....eeeeeeee....eee.hhhh..eeeeee..eeeeee...hhhhheeeeeeeee..........ee...eeeee........eeeee.....eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.....eeeeeeehhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5dtf H    5 EESGGRLVTPGTPLTLTCTVSACSLYHCTMNWVRQAPGKGLEWIGDIYTDGNTYYANWAKGRFTISKTSTTVDLKITSPTTEDTATYFCARDSWDASSYYGLDLWGQGTLVTVSSGQPKGPSVFPLAPCSSTVTLGCLVKGYLPEPVTVTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSSSQPVTCNVAHPATNTKVDKTVAP  210
                                    14        24        34        44        54        64        74        83        93      100C||     108       118       133       143       153       163       173       183       193       203       
                                                                                                        82A               100A||||                        127|                                                                             
                                                                                                                           100B|||                         133                                                                             
                                                                                                                            100C||                                                                                                         
                                                                                                                             100D|                                                                                                         
                                                                                                                              100E

Chain L from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee...eeeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeeee..hhhhheeeeeee..............eeeeee......eeeee.....hhhh.eeeeeeeeeee....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhh..eeeeeeee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5dtf L    1 AIKMTQTPSSVSAAVGGTVTINCQASEDIKRYLAWYQQKPGQPPKLLIYAASKLASGVSSRFKGSGSGTEYTLTISGVQCDDAATYYCQQGYTSSNVNNAFGGGTEVVVKGDPVAPTVLIFPPAADQVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTQYNSHKEYTCKVTQGTTSVVQSFNR  208
                                    10        20        30        40        50        60        70        80        90     |||97       107       117       127       137       147       157       167       177       187       197       207 
                                                                                                                         95A||                                                                                                                 
                                                                                                                          95B|                                                                                                                 
                                                                                                                           95C

Chain P from PDB  Type:PROTEIN  Length:4
                                     
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                5dtf P    3 GxGA    6
                             |  
                             4-5CT

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5DTF)

(no "CATH Domain" information available for 5DTF)

(no "Pfam Domain" information available for 5DTF)

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	Sites
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		AC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Glu A:148 - Pro A:149	[ RasMol ]
		Glu H:148 - Pro H:149	[ RasMol ]
		Leu A:146 - Pro A:147	[ RasMol ]
		Leu H:146 - Pro H:147	[ RasMol ]
		Phe B:140 - Pro B:141	[ RasMol ]
		Phe L:140 - Pro L:141	[ RasMol ]
		Thr B:7 - Pro B:8	[ RasMol ]
		Thr L:7 - Pro L:8	[ RasMol ]

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Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (2, 2)

SS Bonds (12, 12)

Cis Peptide Bonds (8, 8)

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SAPs(SNPs)/Variants (0, 0)

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