Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF ANTHRANILATE SYNTHASE COMPONENT I (TRPE) FROM MYCOBACTERIUM TUBERCULOSIS WITH INHIBITOR BOUND
 
Authors :  J. M. Johnston, G. Bashiri, G. L. Evans, J. S. Lott, E. N. Baker
Date :  28 Jul 15  (Deposition) - 12 Aug 15  (Release) - 18 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Lyase, Inhibitor, Lyase-Lyase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. Bashiri, J. M. Johnston, G. L. Evans, E. M. Bulloch, D. C. Goldstone, E. N. Jirgis, S. Kleinboelting, A. Castell, R. J. Ramsay, A. Manos-Turvey, R. J. Payne, J. S. Lott, E. N. Baker
Structure And Inhibition Of Subunit I Of The Anthranilate Synthase Complex Of Mycobacterium Tuberculosis And Expression Of The Active Complex.
Acta Crystallogr. , Sect. D V. 71 2297 2015
PubMed-ID: 26527146  |  Reference-DOI: 10.1107/S1399004715017216

(-) Compounds

Molecule 1 - ANTHRANILATE SYNTHASE COMPONENT 1
    ChainsA
    EC Number4.1.3.27
    EngineeredYES
    Expression SystemMYCOBACTERIUM SMEGMATIS
    Expression System Taxid1772
    GeneTRPE, MT1644
    MutationYES
    Organism ScientificMYCOBACTERIUM TUBERCULOSIS (STRAIN CDC 1551 / OSHKOSH)
    Organism Taxid83331
    Other DetailsD TO H MUTATION FROM PUBLISHED SEQUENCE AT POSITION 2 DUE TO CLONING ARTEFACT, ALSO AFTER RTEV CLEAVAGE AN ADDITIONAL GA REMAINS ON CONSTRUCT USED PRIOR TO START M (NOT SHOWN IN SEQUENCE ABOVE)
    StrainCDC 1551 / OSHKOSH
    SynonymASI

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (4x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric Unit (4, 6)
No.NameCountTypeFull Name
10GA1Ligand/Ion3-{[(1Z)-1-CARBOXYPROP-1-EN-1-YL]OXY}-2-HYDROXYBENZOICACID
2GOL2Ligand/IonGLYCEROL
3SO42Ligand/IonSULFATE ION
4UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 1 (4, 24)
No.NameCountTypeFull Name
10GA4Ligand/Ion3-{[(1Z)-1-CARBOXYPROP-1-EN-1-YL]OXY}-2-HYDROXYBENZOICACID
2GOL8Ligand/IonGLYCEROL
3SO48Ligand/IonSULFATE ION
4UNL4Ligand/IonUNKNOWN LIGAND

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:383 , SER A:384 , HIS A:385 , VAL A:386 , ARG A:459binding site for residue SO4 A 601
2AC2SOFTWAREARG A:147 , ARG A:231 , LYS A:433 , HOH A:701binding site for residue SO4 A 602
3AC3SOFTWARELYS A:92 , ASP A:93 , PRO A:95 , THR A:96 , ARG A:365 , CYS A:367 , PRO A:369 , ARG A:401 , HOH A:750 , HOH A:778binding site for residue GOL A 603
4AC4SOFTWARETHR A:415 , TYR A:439 , ALA A:472 , GLY A:473 , LYS A:492 , HOH A:721 , HOH A:831binding site for residue 0GA A 604
5AC5SOFTWARELEU A:152 , ARG A:436 , LEU A:438 , TYR A:439 , THR A:460 , TYR A:469 , VAL A:470 , GLN A:471binding site for residue GOL A 605

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CWA)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Arg A:330 -Thr A:331
2Phe A:411 -Pro A:412
3Ala A:419 -Pro A:420

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CWA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CWA)

(-) Exons   (0, 0)

(no "Exon" information available for 5CWA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:505
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh.eeeeeeeee....hhhhhhhhhh.....eeeee.hhhhh....eeeeee....eeeee..eeeee...........hhhhhhhhhhhhh............eeeeee.hhhhhhh...............eeeeee.eeeeee....eeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh................ee..hhhhhhhhhhhhhhhhhh....ee..eeeeeee...hhhhhhhhhhhhh...eeeeeeee.....eeeeeeeee..eeeeee..eeee..eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeee...eeeeeeeeeee.....hhhhhhhhhh.hhhh.eehhhhhhhhhhhhh.........eeeeee....eeeee...eeeee..eeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cwa A   3 ADLAATTSREDFRLLAAEHRVVPVTRKVLADSETPLSAYRKLAANRPGTFLLESAENGRSWSRWSFIGAGAPTALTVREGQAVWLGAVPKDAPTGGDPLRALQVTLELLATADPGLPPLSGGMVGFFAYDMVRRLERLPERAVDDLCLPDMLLLLATDVAAVDHHEGTITLIANAVNWNGTDERVDWAYDDAVARLDVMTAALGQPLPSTVATFSRPEPRHRAQRTVEEYGAIVEYLVDQIAAGEAFQVVPSQRFEMDTDVDPIDVYRILRVTNPSPYMYLLQVPNSDGAVDFSIVGSSPEALVTVHEGWATTHPIAGTRWRGRTDDEDVLLEKELLADDKERAEHLMLVDLGRNDLGRVCTPGTVRVEDYSHIERYSHVMHLVSTVTGKLGEGRTALDAVTACFPAGTLSGAPKVRAMELIEEVEKTRRGLYGGVVGYLDFAGNADFAIAIRTALMRNGTAYVQAGGGVVADSNGSYEYNEARNKARAVLNAIAAAETLAAPGA 511
                                    12        22        32        42        52        62        72        82        92       102       112  ||   126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506     
                                                                                                                                          115|                                                                                                                                                                                                                                                                                                                                                                                                       
                                                                                                                                           120                                                                                                                                                                                                                                                                                                                                                                                                       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CWA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CWA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CWA)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    0GA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    UNL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:419 - Pro A:420   [ RasMol ]  
    Arg A:330 - Thr A:331   [ RasMol ]  
    Phe A:411 - Pro A:412   [ RasMol ]  
 
Biological Unit
  Complete Structure
    Biological Unit 1  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5cwa
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  TRPE_MYCTO | P9WFX2
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  4.1.3.27
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  TRPE_MYCTO | P9WFX2
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 5CWA)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5CWA)