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(-) Description

Title :  CRYSTAL STRUCTURE OF THE RNA-BINDING DOMAIN OF YEAST PUF5P BOUND TO SMX2 RNA
 
Authors :  C. Qiu, T. M. T. Hall
Date :  11 Jun 15  (Deposition) - 23 Sep 15  (Release) - 30 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Puf Rna-Binding Domain, Rna Binding Protein-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Wilinski, C. Qiu, C. P. Lapointe, M. Nevil, Z. T. Campbell, T. M. Tanaka Hall, M. Wickens
Rna Regulatory Networks Diversified Through Curvature Of Th Puf Protein Scaffold.
Nat Commun V. 6 8213 2015
PubMed-ID: 26364903  |  Reference-DOI: 10.1038/NCOMMS9213

(-) Compounds

Molecule 1 - SUPPRESSOR PROTEIN MPT5
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNO RESIDUES 201-600
    Gene: MPT5, HTR1, PUF5, YGL178W, BIC834
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: PROTEIN HTR1,PUMILIO HOMOLOGY DOMAIN FAMILY MEMBER 5
 
Molecule 2 - RNA (5'-R(*UP*GP*UP*AP*CP*UP*AP*UP*A)-3')
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5BZV)

(-) Sites  (0, 0)

(no "Site" information available for 5BZV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BZV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5BZV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BZV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BZV)

(-) Exons   (0, 0)

(no "Exon" information available for 5BZV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:364
                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bzv A 204 EISALPLRDLDYIKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYLTAEQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCTLQQIFKISVKIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAELFNRLSNELCQLSCLKFSSNVVEKFIKKLFRIITGFIVASDDVINASMNILLTTIDIFTVNLNVLIRDNFGNYALQTLLDVKNYSPLLNFCNDFSLKIGNLIVLTKELLPSIKTTSYAKKIKLKVKAYAEAT 599
                                   213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473|      495       505       515       525       535|      565       575       585       595    
                                                                                                                                                                                                                                                                                                       473|                                              535|                                           
                                                                                                                                                                                                                                                                                                        486                                               556                                           


Chain B from PDB  Type:RNA  Length:9
                                         
                 5bzv B   1 UGUACUAUA   9
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BZV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BZV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BZV)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  5bzv
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  MPT5_YEAST | P39016
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MPT5_YEAST | P39016: 5bym 5bz1 5bz5 5bzu

(-) Related Entries Specified in the PDB File

5bym 5BYM CONTAINS THE SAME PROTEIN COMPLEXED WITH THE SAME RNA, BUT IT WAS CRYSTALLIZED IN A DIFFERENT SPACE GROUP