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(-) Description

Title :  RRM-LIKE DOMAIN OF DEAD-BOX PROTEIN, CSDA
 
Authors :  L. Xu, J. Peng, J. Zhang, J. Wu, Y. Tang, Y. Shi
Date :  13 Jun 16  (Deposition) - 31 May 17  (Release) - 31 May 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Xu, J. Peng, J. Zhang, J. Wu, Y. Tang, Y. Shi
Rrm-Like Domain
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ATP-DEPENDENT RNA HELICASE DEAD
    Chains: A
    EC Number: 3.6.4.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RRM-LIKE DOMAIN, UNP RESIDUES 482-564
    Gene: DEAD
    Organism Scientific: ESCHERICHIA COLI K-12
    Organism Taxid: 83333
    Strain: K-12
    Synonym: COLD-SHOCK DEAD BOX PROTEIN A,TRANSLATION FACTOR W2

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5B88)

(-) Sites  (0, 0)

(no "Site" information available for 5B88)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5B88)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5B88)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5B88)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5B88)

(-) Exons   (0, 0)

(no "Exon" information available for 5B88)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:85
                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eee........hhhhhhhhhhhhh................eee........hhhhhh............ee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                 5b88 A 480 MADVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQ 564
                                   489       499       509       519       529       539       549       559
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5B88)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5B88)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5B88)

(-) Gene Ontology  (19, 19)

NMR Structure(hide GO term definitions)

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  5b88
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  DEAD_ECOLI | P0A9P6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DEAD_ECOLI | P0A9P6: 5gi4 5gju

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5B88)