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(-) Description

Title :  CRYSTAL STRUCTURE OF MARBURG VIRUS VP40 DIMER
 
Authors :  S. Oda, Z. A. Bornholdt, D. M. Abelson, E. O. Saphire
Date :  05 Nov 15  (Deposition) - 20 Jan 16  (Release) - 09 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.81
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Marburg Virus, Virus Assembly Protein, Immunosuppression, Filovirus, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Oda, T. Noda, K. J. Wijesinghe, P. Halfmann, Z. A. Bornholdt, D. M. Abelson, T. Armbrust, R. V. Stahelin, Y. Kawaoka, E. O. Saphire
Crystal Structure Of Marburg Virus Vp40 Reveals A Broad, Basic Patch For Matrix Assembly And A Requirement Of The N-Terminal Domain For Immunosuppression
J. Virol. V. 90 1839 2015
PubMed-ID: 26656687  |  Reference-DOI: 10.1128/JVI.01597-15

(-) Compounds

Molecule 1 - MATRIX PROTEIN VP40
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: VP40
    Organism Common: MARV
    Organism Scientific: LAKE VICTORIA MARBURGVIRUS (STRAIN MUSOKE-80)
    Organism Taxid: 33727
    Strain: MUSOKE-80
    Synonym: MEMBRANE-ASSOCIATED PROTEIN VP40

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 15)

Asymmetric/Biological Unit (2, 15)
No.NameCountTypeFull Name
1EOH1Ligand/IonETHANOL
2MSE14Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5B0V)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5B0V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5B0V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5B0V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5B0V)

(-) Exons   (0, 0)

(no "Exon" information available for 5B0V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeee..hhhhh.....eeeeeeeeeeeee....eeeeeeeeeeeeee.hhhhhhhhhhhhhhh.eeeeeee....eeeeeee.........hhhhhhheeeee.hhh........eeeeeeeeeeeee........hhhhhhh..eeeeee.......ee....hhhhhh......hhhhhhhhhhhhhh.eee......eeeee.................eeeee.....hhhhh...eeeeee.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5b0v A  38 GITPNYVGDLNLDDQFKGNVCHAFTLEAIIDISNERTVKGVPAWLPLGImSNFEYPLAHTVAALLTGSYTITQFTHNGQKFVRVNRLGTGIPAHPLRmLREGNQAFIQNmVIPRNFNQFTYNLTNLVLSVQKLPDDAWRPSKDKLIGNTmHPAVSIHPNLPPIVLPTVKKQAYRQHKNPNNGPLLAISGILHQLRVEKVPEKTSLFRISLPADmFSVKEGmmENSPVVYFQAPENFPLNGFNNRQVVLAYANPTLSAV 303
                                    47        57        67  ||    79        89        99       109       119       129       139       149     ||161       171       181       191       201       211       221       231       241       251   |   261|||    275       285       295        
                                                           70|              89-MSE                                         137-MSE     149-MSE55|                              191-MSE                                                         255-MSE  |||                                   
                                                            73                                                                                158                                                                                                     262-MSE                                 
                                                                                                                                                                                                                                                       263-MSE                                
                                                                                                                                                                                                                                                        268                                   


Chain B from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..hhhhh.....eeeeeeeeeeeeee......eeeeeeeeeeeee.hhhhhhhhhhhhhhh.eeeeeeee..eeeeeeee.........hhhhhhheeeee.hhh.hhhhh...eeeeeeeeeeeeee........hhhhhhh..eeeeee.......ee....hhhhh....hhhhhhhhhhhhhh.eee......eeeee.............eeeee.....hhhhh...eeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b0v B  36 QQGITPNYVGDLNLDDQFKGNVCHAFTLEAIIDISAYNERTVKGVPAWLPLGImSNFEYPLAHTVAALLTGSYTITQFTHNGQKFVRVNRLGTGIPAHPLRmLREGNQAFIQNmVIPRNFSTNQFTYNLTNLVLSVQKLPDDAWRPSKDKLIGNTmHPAVSIHPNLPPIVLPTVKKQAYRNPNNGPLLAISGILHQLRVEKVPEKTSLFRISLPADmFSVGmmSPVVYFQAPENFPLNGFNNRQVVLAYANPTLS 301
                                    45        55        65        75        85   |    95       105       115       125       135 |     145   |   155       165       175       185     | 195       205       215|      228       238       248      |258||||   276       286       296     
                                                                                89-MSE                                         137-MSE     149-MSE                                   191-MSE                 215|                                 255-MSE|||                               
                                                                                                                                                                                                              219                                    258||||                               
                                                                                                                                                                                                                                                      261|||                               
                                                                                                                                                                                                                                                       262-MSE                             
                                                                                                                                                                                                                                                        263-MSE                            
                                                                                                                                                                                                                                                         270
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5B0V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5B0V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5B0V)

(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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