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Title :   T. BRUCEI FARNESYL DIPHOSPHATE SYNTHASE COMPLEXED WITH BISPHOSPHONATE BPH-1238

Authors :   G. Yang, E. Oldfield, J. H. No

Date :   27 Jan 15 (Deposition) - 28 Oct 15 (Release) - 02 Dec 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.39

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)

Keywords :   Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Yang, W. Zhu, K. Kim, S. Y. Byun, G. Choi, K. Wang, J. S. Cha, H. Cho, E. Oldfield, J. H. No
Inhibition Of Trypanosoma Brucei Cell Growth By Lipophilic Bisphosphonates: An In Vitro And In Vivo Investigation.
Antimicrob. Agents Chemother. V. 59 7530 2015
PubMed-ID: 26392508 | Reference-DOI: 10.1128/AAC.01873-15

Molecule 1 - FARNESYL PYROPHOSPHATE SYNTHASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	TRYPANOSOMA BRUCEI
	Organism Taxid	:	5691

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	MG	6	Ligand/Ion	MAGNESIUM ION
2	PVZ	2	Ligand/Ion	[1-HYDROXY-2-(1-NONYL-1H-3LAMBDA~5~-IMIDAZOL-3-YL)ETHANE-1,1-DIYL]BIS(PHOSPHONIC ACID)

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	PVZ	2	Ligand/Ion	[1-HYDROXY-2-(1-NONYL-1H-3LAMBDA~5~-IMIDAZOL-3-YL)ETHANE-1,1-DIYL]BIS(PHOSPHONIC ACID)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:255 , ASP A:259 , PVZ A:1371	BINDING SITE FOR RESIDUE MG A1368
2	AC2	SOFTWARE	ASP A:103 , ASP A:107 , PVZ A:1371	BINDING SITE FOR RESIDUE MG A1369
3	AC3	SOFTWARE	ASP A:103 , ASP A:107 , GLN A:172 , PVZ A:1371	BINDING SITE FOR RESIDUE MG A1370
4	AC4	SOFTWARE	ASP B:255 , ASP B:259 , PVZ B:1371 , HOH B:2062	BINDING SITE FOR RESIDUE MG B1368
5	AC5	SOFTWARE	ASP B:103 , ASP B:107 , PVZ B:1371	BINDING SITE FOR RESIDUE MG B1369
6	AC6	SOFTWARE	ASP B:103 , ASP B:107 , GLN B:172 , ASP B:175 , PVZ B:1371 , HOH B:2032	BINDING SITE FOR RESIDUE MG B1370
7	AC7	SOFTWARE	TYR A:99 , LEU A:100 , ASP A:103 , MET A:106 , ASP A:107 , ARG A:112 , ASP A:165 , ALA A:169 , GLN A:172 , LYS A:212 , TYR A:216 , ASP A:255 , LYS A:269 , MG A:1368 , MG A:1369 , MG A:1370 , HOH A:2028 , ASN B:131 , LEU B:134	BINDING SITE FOR RESIDUE PVZ A1371
8	AC8	SOFTWARE	ASN A:131 , HOH A:2037 , TYR B:99 , ASP B:103 , MET B:106 , ASP B:107 , ARG B:112 , ALA B:169 , GLN B:172 , LYS B:212 , THR B:213 , TYR B:216 , ASP B:255 , LYS B:269 , MG B:1368 , MG B:1369 , MG B:1370 , HOH B:2069	BINDING SITE FOR RESIDUE PVZ B1371

(no "SS Bond" information available for 5AFX)

(no "Cis Peptide Bond" information available for 5AFX)

(no "SAP(SNP)/Variant" information available for 5AFX)

(no "PROSITE Motif" information available for 5AFX)

(no "Exon" information available for 5AFX)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:357
                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee..ee.hhhh...hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afx A   1 MPMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTCLGGKYNRGLTVIDVAESLLSDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVETLWGKTYKRQK 367
                                    10        20        30        40        50        60  ||    80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       
                                                                                         63|                                                                                                                                                                                                                                                                                                     
                                                                                          74

Chain B from PDB  Type:PROTEIN  Length:357
                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee.hhhh...hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afx B   1 MPMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTCLGGKYNRGLTVIDVAESLLSDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVETLWGKTYKRQK 367
                                    10        20        30        40        50        60  ||    80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       
                                                                                         63|                                                                                                                                                                                                                                                                                                     
                                                                                          74

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5AFX)

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Description

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Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

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