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(-) Description

Title :  STRUCTURE-BASED DESIGN OF ASK1 INHIBITORS AS POTENTIAL FIRST-IN-CLASS AGENTS FOR HEART FAILURE
 
Authors :  D. R. Dougan
Date :  01 Feb 17  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase, Metal-Binding, Apoptosis, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Lanier, J. Pickens, S. V. Bigi, E. L. Bradshaw-Pierce, A. Chambers, Z. S. Cheruvallath, D. Cole, D. R. Dougan, J. Ermolieff, T. Gibson, P. Halkowycz, A. Hirokawa, A. Ivetac, J. Miura, E. Nunez, M. Sabat, J. Tyhonas, H. Wang, X. Wang, S. Swann
Structure-Based Design Of Ask1 Inhibitors As Potential Agents For Heart Failure.
Acs Med Chem Lett V. 8 316 2017
PubMed-ID: 28337323  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.6B00481

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5
    ChainsA, B
    EC Number2.7.11.25
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPEH8
    Expression System StrainROSETTA 2(DE3) PLYSS
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 670-940
    GeneMAP3K5, ASK1, MAPKKK5, MEKK5
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymAPOPTOSIS SIGNAL-REGULATING KINASE 1,ASK-1,MAPK/ERK KINASE KINASE 5,MEKK 5

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
18GS2Ligand/Ion2-{6-[4-(PROPAN-2-YL)-4H-1,2,4-TRIAZOL-3-YL]PYRIDIN-2-YL}-2,3-DIHYDRO-1H-ISOINDOL-1-ONE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
18GS1Ligand/Ion2-{6-[4-(PROPAN-2-YL)-4H-1,2,4-TRIAZOL-3-YL]PYRIDIN-2-YL}-2,3-DIHYDRO-1H-ISOINDOL-1-ONE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
18GS1Ligand/Ion2-{6-[4-(PROPAN-2-YL)-4H-1,2,4-TRIAZOL-3-YL]PYRIDIN-2-YL}-2,3-DIHYDRO-1H-ISOINDOL-1-ONE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:686 , GLY A:687 , GLY A:689 , VAL A:694 , LYS A:709 , VAL A:738 , MET A:754 , GLU A:755 , GLN A:756 , VAL A:757 , GLY A:760 , ASP A:807 , LEU A:810 , SER A:821 , ASP A:822binding site for residue 8GS A 1000
2AC2SOFTWARELEU B:686 , GLY B:689 , ALA B:707 , LYS B:709 , VAL B:738 , MET B:754 , GLU B:755 , GLN B:756 , VAL B:757 , GLY B:760 , ASP B:807 , LEU B:810 , SER B:821binding site for residue 8GS B 1000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UP3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5UP3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UP3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UP3)

(-) Exons   (0, 0)

(no "Exon" information available for 5UP3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee.........eeeee..eeeeeeee.....eeeeeeee...hhhhhhhhhh.........eeeeeee..eeeeeee.....hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee......eee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5up3 A 670 LLEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLTFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLKV 940
                                   679       689       699       709    || 724       734       744       754       764       774       784       794       804       814       824    || 842       852       862       872       882       892       902       912       922       932        
                                                                      714|                                                                                                          829|                                                                                                      
                                                                       720                                                                                                           838                                                                                                      

Chain B from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.........eeee....eeeeeee.....eeeeeeee...hhhhhhhhhh........eeeeeee..eeeeeee.....hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh..ee........eee......eee......ee.......hhhhhh..hhhhhhhhhhhhhhhhhhh......hhhhhhhhhh.........hhhhhhhhhhhh..hhhhh.hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5up3 B 671 LEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLGTLQYMAPEIIDGYGKAADIWSLGCTIIEMATGKPPFYQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLK 939
                                   680       690       700       710   ||  726       736       746       756       766       776       786       796       806       816       826  ||   847    || 861       871       881||     896       906       916       926       936   
                                                                     714|                                                                                                         829|        852|                      882|                                                   
                                                                      721                                                                                                          841         857                       888                                                   

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UP3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UP3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UP3)

(-) Gene Ontology  (46, 46)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        M3K5_HUMAN | Q996832clq 3vw6 4bf2 4bhn 4bib 4bic 4bid 4bie 5ulm 5uor 5uox 5v19 5v24

(-) Related Entries Specified in the PDB File

5uor 5uox