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(-) Description

Title :  CRYSTAL STRUCTURE OF SYK KINASE DOMAIN WITH INHIBITOR
 
Authors :  J. M. Ellis, M. D. Altman, B. Cash, A. M. Haidle, R. L. Kubiak, M. L. Maddes A. B. Northrup
Date :  03 Oct 16  (Deposition) - 11 Jan 17  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.49
Chains :  Asym./Biol. Unit :  A
Keywords :  Carboxamide Spleen Tyrosine Kinase (Syk), Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. M. Ellis, M. D. Altman, B. Cash, A. M. Haidle, R. L. Kubiak, M. L. Maddess, Y. Yan, A. B. Northrup
Carboxamide Spleen Tyrosine Kinase (Syk) Inhibitors: Leveraging Ground State Interactions To Accelerate Optimization.
Acs Med Chem Lett V. 7 1151 2016
PubMed-ID: 27994755  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.6B00353

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE SYK
    ChainsA
    EC Number2.7.10.2
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System StrainSF9
    Expression System Taxid7108
    FragmentUNP RESIDUES 356-635
    GeneSYK
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsGATEWAY (INVITROGEN) ADAPTED PCDNA6 ATTB HISC VECTOR
    SynonymSPLEEN TYROSINE KINASE,P72-SYK

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
17CU1Ligand/Ion5-{[(2S)-2-AMINOPROPYL]AMINO}-3-(1H-INDOL-2-YL)PYRAZINE-2-CARBOXAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:400 , MET A:448 , GLU A:449 , MET A:450 , ALA A:451 , GLU A:452 , GLY A:454 , PRO A:455 , ARG A:498 , ASN A:499 , LEU A:501 , ASP A:512 , HOH A:894binding site for residue 7CU A 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TIU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5TIU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TIU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TIU)

(-) Exons   (0, 0)

(no "Exon" information available for 5TIU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:266
                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eee.......eeeeeee....eeeeeeeee..hhhhhhhhhhhhhh........eeeeee...eeeeee....eehhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee......eee.......hhhhhhhhhhhhheeehhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tiu A 363 VYLDRKLLTLEDKELGTVKKGYYQMKKVVKTVAVKILKALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVVNEGHH 639
                                   372     ||387       397       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633      
                                         378|                  405|                                                                                                                                                                                                                                   
                                          384                   412                                                                                                                                                                                                                                   

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TIU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TIU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TIU)

(-) Gene Ontology  (87, 87)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KSYK_HUMAN | P434051a81 1csy 1csz 1xba 1xbb 1xbc 3buw 3emg 3fqe 3fqh 3fqs 3srv 3tub 3tuc 3tud 3vf8 3vf9 4dfl 4dfn 4f4p 4fl1 4fl2 4fl3 4fyn 4fyo 4fz6 4fz7 4gfg 4i0r 4i0s 4i0t 4puz 4pv0 4px6 4rss 4rx7 4rx8 4rx9 4wnm 4xg2 4xg3 4xg4 4xg6 4xg7 4xg8 4xg9 4yjo 4yjp 4yjq 4yjr 4yjs 4yjt 4yju 4yjv 5c26 5c27 5cxh 5cxz 5cy3 5ghv 5lma 5lmb 5t68 5tr6 5tt7

(-) Related Entries Specified in the PDB File

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