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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN CANNABINOID RECEPTOR CB1
 
Authors :  T. Hua, K. Vemuri, M. Pu, L. Qu, G. W. Han, Y. Wu, S. Zhao, W. Shui, S. Li, A. K R. B. Laprairie, E. L. Stahl, J-H. Ho, N. Zvonok, H. Zhou, I. Kufareva, B Q. Zhao, M. A. Hanson, L. M. Bohn, A. Makriyannis, R. C. Stevens, Z-J. Li
Date :  28 Sep 16  (Deposition) - 02 Nov 16  (Release) - 02 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Membrane Protein, G Protein-Coupled Receptor, Human Cannabinoid Receptor Cb1, Marijuana, Stabilizing Antagonist Am6538, Lipidic Cubic Phase, Cb1-Flavodoxin Chimera, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Hua, K. Vemuri, M. Pu, L. Qu, G. W. Han, Y. Wu, S. Zhao, W. Shui, S. Li, A. Korde, R. B. Laprairie, E. L. Stahl, J. H. Ho, N. Zvonok, H. Zhou, I. Kufareva, B. Wu, Q. Zhao, M. A. Hanson, L. M. Bohn, A. Makriyannis, R. C. Stevens, Z. J. Liu
Crystal Structure Of The Human Cannabinoid Receptor Cb1.
Cell V. 167 750 2016
PubMed-ID: 27768894  |  Reference-DOI: 10.1016/J.CELL.2016.10.004

(-) Compounds

Molecule 1 - CANNABINOID RECEPTOR 1,FLAVODOXIN,CANNABINOID RECEPTOR 1
    ChainsA
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System CellHEK293F
    Expression System Cell LineFREESTYLE 293-F (HEK-293F)
    Expression System PlasmidPTT5
    Expression System Taxid9606
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 99-306,UNP RESIDUES 2-148,UNP RESIDUES 332- 414
    GeneCNR1, CNR, DVU_2680
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS, DESULFOVIBRIO VULGARIS
    Organism Taxid9606, 882
    Other DetailsTHE FUSION PROTEIN OF CANNABINOID RECEPTOR 1 (RESIDUES 99-306), FLAVODOXIN (RESIDUES 1002-1148), AND CANNABINOID RECEPTOR 1 (RESIDUES 332-414)
    StrainHILDENBOROUGH / ATCC 29579 / NCIMB 8303
    SynonymCB1,CANN6,CB1,CANN6

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 7)

Asymmetric/Biological Unit (5, 7)
No.NameCountTypeFull Name
1FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
2OLA3Ligand/IonOLEIC ACID
3OLC1Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5ZDG1Ligand/Ion4-[4-[2-(2,4-DICHLOROPHENYL)-4-METHYL-5-(PIPERIDIN-1-YLCARBAMOYL)PYRAZOL-3-YL]PHENYL]BUT-3-YNYL NITRATE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:102 , MET A:103 , ILE A:105 , GLY A:166 , PHE A:170 , PHE A:174 , LEU A:193 , VAL A:196 , THR A:197 , LEU A:359 , MET A:363 , ALA A:380 , SER A:383 , CYS A:386 , LEU A:387binding site for residue ZDG A 2001
2AC2SOFTWARESER A:1010 , THR A:1011 , THR A:1012 , GLY A:1013 , ASN A:1014 , THR A:1015 , SER A:1058 , THR A:1059 , TRP A:1060 , GLY A:1061 , CYS A:1093 , GLY A:1094 , ASP A:1095 , TRP A:1098 , TYR A:1100 , PHE A:1101 , CYS A:1102binding site for residue FMN A 2002
3AC3SOFTWAREARG A:226 , TYR A:1008 , GLU A:1016 , ASP A:1037binding site for residue OLC A 2003
4AC4SOFTWAREPRO A:151 , SER A:152 , ILE A:156 , LEU A:209 , ASP A:213 , PHE A:237 , LEU A:341binding site for residue OLA A 2004
5AC5SOFTWARELEU A:209binding site for residue OLA A 2006

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:257 -A:264

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:-2 -Gly A:-1
2Asn A:112 -Pro A:113

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TGZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TGZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5TGZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:439
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhhh..eeeeee.hhh..........eeeeee.............hhhhhhhhhhh.....eeeeeeee.......hhhhhhhhhhhhhh..ee....eeee.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5tgz A   -2 GGRGENFMDIECFMVLNPSQQLAIAVLSLTLGTFTVLENLLVLCVILHSRSLRCRPSYHFIGSLAVADLLGSVIFVYSFIDFHVFHRKDSRNVFLFKLGGVTASFTASVGSLFLAAIDRYISIHRPLAYKRIVTRPKAVVAFCLMWTIAIVIAVLPLLGWNCEKLQSVCSDIFPHIDKTYLMFWIGVVSVLLLFIVYAYMYILWKAHSHAVAKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAIPDQARMDIELAKTLVLILVVLIICWGPLLAIMVYDVFGKMNKLIKTVFAFCSMLCLLNSTVNPIIYALRSKDLRHAFRSMF  412
                              ||   105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305||    1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140       333       343       353       363       373       383       393       403         
                              0|                                                                                                                                                                                                            306|                                                                                                                                              1148|                                                                                
                              99                                                                                                                                                                                                            1002                                                                                                                                                332                                                                                

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TGZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TGZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TGZ)

(-) Gene Ontology  (52, 52)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CNR1_HUMAN | P215541lvq 1lvr 2b0y 2koe 2mz2 2mz3 2mza 5u09 5xr8 5xra
        FLAV_DESVH | P003231akq 1akr 1akt 1aku 1akv 1akw 1azl 1bu5 1c7e 1c7f 1f4p 1fx1 1i1o 1j8q 1j9e 1j9g 1wsb 1wsw 1xt6 1xyv 1xyy 2fx2 3fx2 4fx2 5fx2 5v56 5v57 5xr8 5xra

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5TGZ)