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(-) Description

Title :  STRUCTURE OF HUMAN N-TERMINALLY ENGINEERED RAB1B IN COMPLEX WITH THE BMERB DOMAIN OF MICAL-CL
 
Authors :  A. Rai, A. Oprisko, J. Campos, Y. Fu, T. Friese, A. Itzen, R. S. Goody, E. M M. P. Mueller
Date :  14 Aug 16  (Deposition) - 24 Aug 16  (Release) - 14 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Mical-Cl, Duf3585, Mical, Rab Effector, Rab1B, Protein Transport, Endocytosis (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Rai, A. Oprisko, J. Campos, Y. Fu, T. Friese, A. Itzen, R. S. Goody, E. M. Gazdag, M. P. Muller
Bmerb Domains Are Bivalent Rab8 Family Effectors Evolved By Gene Duplication.
Elife V. 5 2016
PubMed-ID: 27552051  |  Reference-DOI: 10.7554/ELIFE.18675

(-) Compounds

Molecule 1 - MICAL C-TERMINAL-LIKE PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneMICALCL
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymERK2-BINDING TESTICULAR PROTEIN 1,EBITEIN-1
 
Molecule 2 - RAS-RELATED PROTEIN RAB-1B
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneRAB1B
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1GNP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER B:22 , ILE B:38 , THR B:40 , GNP B:302binding site for residue MG B 301
2AC2SOFTWARESER B:17 , GLY B:18 , VAL B:19 , GLY B:20 , LYS B:21 , SER B:22 , CYS B:23 , TYR B:33 , THR B:34 , GLU B:35 , SER B:36 , TYR B:37 , SER B:39 , THR B:40 , GLY B:66 , ASN B:121 , LYS B:122 , ASP B:124 , SER B:151 , ALA B:152 , LYS B:153 , MG B:301binding site for residue GNP B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5SZK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5SZK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5SZK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5SZK)

(-) Exons   (0, 0)

(no "Exon" information available for 5SZK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5szk A 533 MKQEELKRLYKAQAIQRQLEEVEERQRASEIQGVRLEKALRDEAQLLQEWFKLVLEKNKLMRYESELLIMAQELELEDHQSRLEQKLREKMLKEESQKDEKDLNEEQEVFTELMQVIEQRDKLVDSLEEQRIREKAEDQH 680
                                   542       552       562       572||     590       600       610       620       630       640       650       660       670       680
                                                                  573|                                                                                                  
                                                                   582                                                                                                  

Chain B from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeee....hhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee..hhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhh.....eee.......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5szk B   1 MAKTYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 173
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5SZK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5SZK)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (30, 31)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MICLK_HUMAN | Q6ZW335szh 5szi 5szj
        RAB1B_HUMAN | Q9H0U43jza 3nkv 4hlq 4i1o 5szh

(-) Related Entries Specified in the PDB File

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