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(-) Description

Title :  DOMAIN-SWAPPED DIMER OF HUMAN DISHEVELLED2 DEP DOMAIN: MONOCLINIC CRYSTAL FORM CRYSTALLISED FROM DIMERIC FRACTION
 
Authors :  M. Renko, M. V. Gammons, M. Bienz
Date :  04 Aug 16  (Deposition) - 12 Oct 16  (Release) - 19 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Dishevelled, Dep Domain, Wnt Signalling, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. V. Gammons, M. Renko, C. M. Johnson, T. J. Rutherford, M. Bienz
Wnt Signalosome Assembly By Dep Domain Swapping Of Dishevelled.
Mol. Cell V. 64 92 2016
PubMed-ID: 27692984  |  Reference-DOI: 10.1016/J.MOLCEL.2016.08.026

(-) Compounds

Molecule 1 - SEGMENT POLARITY PROTEIN DISHEVELLED HOMOLOG DVL-2
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPETM-41
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 416-510
    GeneDVL2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymDISHEVELLED-2,DSH HOMOLOG 2

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:473 , ARG A:476 , ARG C:476 , SER C:498 , GLU C:499 , GLN C:500binding site for residue SO4 C 101
2AC2SOFTWARELYS C:494 , ILE C:495 , THR C:496binding site for residue SO4 C 102
3AC3SOFTWARELYS D:494 , ILE D:495 , THR D:496binding site for residue SO4 D 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5SUY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5SUY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5SUY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5SUY)

(-) Exons   (0, 0)

(no "Exon" information available for 5SUY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhh.......eeeeeeee.....eehhhhhhhhhhhh....hhhhhhhhhhhhhhh..eee...........eeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5suy A 415 SGLSVHTDMASVTKAMAAPESGLEVRDRMWLKITIPNAFLGSDVVDWLYHHVEGFPERREARKYASGLLKAGLIRHTVNKITFSEQCYYVFGDLS 509
                                   424       434       444       454       464       474       484       494       504     

Chain B from PDB  Type:PROTEIN  Length:94
                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhh..........eeeeeeeeeeeehhhhhhhhhhhh....hhhhhhhhhhhhhhh..eee...........eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 5suy B 415 SGLSVHTDMASVTKAMAAPESGLEVRDRMWLKITIPNAFLGSDVVDWLYHHVEGFPERREARKYASGLLKAGLIRHTVNKITFSEQCYYVFGDL 508
                                   424       434       444       454       464       474       484       494       504    

Chain C from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhh..........eeeeeeeeeeeehhhhhhhhhhhh....hhhhhhhhhhhhhhh..eee...........eeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5suy C 415 SGLSVHTDMASVTKAMAAPESGLEVRDRMWLKITIPNAFLGSDVVDWLYHHVEGFPERREARKYASGLLKAGLIRHTVNKITFSEQCYYVFGDLS 509
                                   424       434       444       454       464       474       484       494       504     

Chain D from PDB  Type:PROTEIN  Length:94
                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh.......eeeeeeee.....eehhhhhhhhhhhh....hhhhhhhhhhhhhhh..eee...........eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 5suy D 416 GLSVHTDMASVTKAMAAPESGLEVRDRMWLKITIPNAFLGSDVVDWLYHHVEGFPERREARKYASGLLKAGLIRHTVNKITFSEQCYYVFGDLS 509
                                   425       435       445       455       465       475       485       495       505    

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5SUY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5SUY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5SUY)

(-) Gene Ontology  (47, 47)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DVL2_HUMAN | O146412rey 3cbx 3cby 3cbz 3cc0 4wip 5lnp 5suz

(-) Related Entries Specified in the PDB File

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